Warning: Permanently added '54.166.148.247' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6965707-fedora-rawhide-i386 --chroot fedora-rawhide-i386


Version: 0.70
PID: 6085
Logging PID: 6086
Task:
{'appstream': False,
 'background': True,
 'build_id': 6965707,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-i386',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '4a2467ac33f5b72fc82a55fd9e6b0ac18219aa05',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/seqan',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'seqan',
 'package_version': '1.4.2-53',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-rawhide-i386/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/releng',
 'source_json': {},
 'source_type': None,
 'submitter': 'https://src.fedoraproject.org/user/releng',
 'tags': [],
 'task_id': '6965707-fedora-rawhide-i386',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/seqan /var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/seqan', '/var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan'...

Running: git checkout 4a2467ac33f5b72fc82a55fd9e6b0ac18219aa05 --

cmd: ['git', 'checkout', '4a2467ac33f5b72fc82a55fd9e6b0ac18219aa05', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan
rc: 0
stdout: 
stderr: Note: switching to '4a2467ac33f5b72fc82a55fd9e6b0ac18219aa05'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 4a2467a automatic import of seqan

Running: copr-distgit-client sources
INFO: Calling: curl -H Pragma: -o seqan-src-1.4.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/seqan/seqan-src-1.4.2.tar.gz/md5/e7d2c6cf6474b5186c27ec31bd32738a/seqan-src-1.4.2.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  115M  100  115M    0     0   462M      0 --:--:-- --:--:-- --:--:--  461M
INFO: Reading stdout from command: md5sum seqan-src-1.4.2.tar.gz

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan/seqan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706326045.169591 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan/seqan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706326045.169591 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan/seqan.spec)  Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.4
INFO: Mock Version: 5.4
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1706326045.169591/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-i686-bootstrap-1706326045.169591/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/d73b0d06a4f1f0d332b0d3c8b8bceb13634b9e10a9812375c5e01eb5ed4b256e/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/d73b0d06a4f1f0d332b0d3c8b8bceb13634b9e10a9812375c5e01eb5ed4b256e/merged) with podman image umount
INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  71 MB/s |  23 MB     00:00    
Additional repo http_kojipkgs_fedoraproject_org 239 MB/s |  73 MB     00:00    
local                                           192 MB/s |  73 MB     00:00    
Last metadata expiration check: 0:00:03 ago on Sat Jan 27 03:27:47 2024.
Dependencies resolved.
==========================================================================================================
 Package        Arch    Version       Repository                                                      Size
==========================================================================================================
Installing:
 dnf5           x86_64  5.1.11-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  543 k
 dnf5-plugins   x86_64  5.1.11-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  329 k
Installing dependencies:
 fmt            x86_64  10.2.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  125 k
 libdnf5        x86_64  5.1.11-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  926 k
 libdnf5-cli    x86_64  5.1.11-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  219 k
 sdbus-cpp      x86_64  1.4.0-1.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  109 k

Transaction Summary
==========================================================================================================
Install  6 Packages

Total download size: 2.2 M
Installed size: 6.1 M
Downloading Packages:
(1/6): dnf5-5.1.11-1.fc40.x86_64.rpm             16 MB/s | 543 kB     00:00    
(2/6): fmt-10.2.1-1.fc40.x86_64.rpm             3.6 MB/s | 125 kB     00:00    
(3/6): libdnf5-cli-5.1.11-1.fc40.x86_64.rpm      32 MB/s | 219 kB     00:00    
(4/6): dnf5-plugins-5.1.11-1.fc40.x86_64.rpm    7.4 MB/s | 329 kB     00:00    
(5/6): sdbus-cpp-1.4.0-1.fc40.x86_64.rpm         20 MB/s | 109 kB     00:00    
(6/6): libdnf5-5.1.11-1.fc40.x86_64.rpm          30 MB/s | 926 kB     00:00    
--------------------------------------------------------------------------------
Total                                            33 MB/s | 2.2 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : fmt-10.2.1-1.fc40.x86_64                               1/6 
  Installing       : libdnf5-5.1.11-1.fc40.x86_64                           2/6 
  Installing       : libdnf5-cli-5.1.11-1.fc40.x86_64                       3/6 
  Installing       : dnf5-5.1.11-1.fc40.x86_64                              4/6 
  Installing       : sdbus-cpp-1.4.0-1.fc40.x86_64                          5/6 
  Installing       : dnf5-plugins-5.1.11-1.fc40.x86_64                      6/6 
  Running scriptlet: dnf5-plugins-5.1.11-1.fc40.x86_64                      6/6 

Installed:
  dnf5-5.1.11-1.fc40.x86_64              dnf5-plugins-5.1.11-1.fc40.x86_64      
  fmt-10.2.1-1.fc40.x86_64               libdnf5-5.1.11-1.fc40.x86_64           
  libdnf5-cli-5.1.11-1.fc40.x86_64       sdbus-cpp-1.4.0-1.fc40.x86_64          

Complete!
INFO: Switching package manager from dnf to the dnf5 (direct choice)
Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1706326045.169591/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1-2.fc40.x86_64
  rpm-sequoia-1.5.0-2.fc40.x86_64
  python3-dnf-4.18.2-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
  dnf5-5.1.11-1.fc40.x86_64
  dnf5-plugins-5.1.11-1.fc40.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 local                                  100% |  93.2 MiB/s |  15.2 MiB |  00m00s
 Copr repository                        100% |  45.5 MiB/s |   4.0 MiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 124.2 MiB/s |  15.1 MiB |  00m00s
Repositories loaded.
Package                           Arch   Version                    Repository                                                         Size
Installing group/module packages:                                                                                                          
 bash                             i686   5.2.26-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.3 MiB
 bzip2                            i686   1.0.8-16.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  93.9 KiB
 coreutils                        i686   9.4-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.6 MiB
 cpio                             i686   2.15-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 diffutils                        i686   3.10-3.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release                   noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 findutils                        i686   1:4.9.0-6.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 gawk                             i686   5.3.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 glibc-minimal-langpack           i686   2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                             i686   3.11-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                             i686   1.12-6.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 375.1 KiB
 info                             i686   7.1-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 372.4 KiB
 patch                            i686   2.7.6-22.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 281.9 KiB
 redhat-rpm-config                noarch 280-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.2 KiB
 rpm-build                        i686   4.19.1-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 154.6 KiB
 sed                              i686   4.8-14.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 797.1 KiB
 shadow-utils                     i686   2:4.14.0-2.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 MiB
 tar                              i686   2:1.35-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 unzip                            i686   6.0-62.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 396.1 KiB
 util-linux                       i686   2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.3 MiB
 which                            i686   2.21-40.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.8 KiB
 xz                               i686   5.4.5-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.0 MiB
Installing dependencies:                                                                                                                   
 alternatives                     i686   1.26-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.4 KiB
 ansible-srpm-macros              noarch 1-12.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                       i686   4.0-7.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 325.7 KiB
 authselect                       i686   1.5.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.6 KiB
 authselect-libs                  i686   1.5.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 991.0 KiB
 basesystem                       noarch 11-18.fc39                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                         i686   2.41-30.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.4 MiB
 binutils-gold                    i686   2.41-30.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.1 MiB
 bzip2-libs                       i686   1.0.8-16.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  75.9 KiB
 ca-certificates                  noarch 2023.2.62_v7.0.401-4.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 coreutils-common                 i686   9.4-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.4 MiB
 cracklib                         i686   2.9.11-2.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 239.7 KiB
 crypto-policies                  noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.3 KiB
 curl                             i686   8.5.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 793.6 KiB
 cyrus-sasl-lib                   i686   2.1.28-17.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 debugedit                        i686   5.0-12.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB
 dwz                              i686   0.15-3.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 304.9 KiB
 ed                               i686   1.20-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141.2 KiB
 efi-srpm-macros                  noarch 5-9.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                         i686   0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 elfutils-debuginfod-client       i686   0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.2 KiB
 elfutils-default-yama-scope      noarch 0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                  i686   0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 elfutils-libs                    i686   0.190-4.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 708.7 KiB
 fedora-gpg-keys                  noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.2 KiB
 fedora-release-common            noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.1 KiB
 fedora-release-identity-basic    noarch 40-0.29                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0   B
 fedora-repos                     noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide             noarch 40-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                             i686   5.45-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  94.5 KiB
 file-libs                        i686   5.45-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.9 MiB
 filesystem                       i686   3.18-6.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  88.0   B
 fonts-srpm-macros                noarch 1:2.0.5-12.fc39            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.3 KiB
 forge-srpm-macros                noarch 0.2.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.4 KiB
 fpc-srpm-macros                  noarch 1.3-8.fc39                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                      i686   14.1-7.fc40                copr_base                                                      12.9 MiB
 gdbm                             i686   1:1.23-4.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 461.7 KiB
 gdbm-libs                        i686   1:1.23-4.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128.4 KiB
 ghc-srpm-macros                  noarch 1.6.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 369.0   B
 glibc                            i686   2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 MiB
 glibc-common                     i686   2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 glibc-gconv-extra                i686   2.38.9000-35.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.2 MiB
 gmp                              i686   1:6.2.1-5.fc39             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 725.6 KiB
 gnat-srpm-macros                 noarch 6-3.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                   noarch 3.3.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.6 KiB
 jansson                          i686   2.13.1-7.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  87.6 KiB
 kernel-srpm-macros               noarch 1.0-20.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                    i686   1.6.3-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.6 KiB
 krb5-libs                        i686   1.21.2-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 libacl                           i686   2.3.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.3 KiB
 libarchive                       i686   3.7.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 998.2 KiB
 libattr                          i686   2.5.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.8 KiB
 libblkid                         i686   2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.9 KiB
 libbrotli                        i686   1.1.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 855.5 KiB
 libcap                           i686   2.69-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.1 KiB
 libcap-ng                        i686   0.8.4-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  71.7 KiB
 libcom_err                       i686   1.47.0-2.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  62.4 KiB
 libcurl                          i686   8.5.0-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 800.7 KiB
 libeconf                         i686   0.5.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.2 KiB
 libevent                         i686   2.1.12-9.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 971.9 KiB
 libfdisk                         i686   2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 410.0 KiB
 libffi                           i686   3.4.4-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  76.7 KiB
 libgcc                           i686   14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.4 KiB
 libgomp                          i686   14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 520.7 KiB
 libidn2                          i686   2.3.4-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 318.3 KiB
 libmount                         i686   2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 383.2 KiB
 libnghttp2                       i686   1.59.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 165.4 KiB
 libnsl2                          i686   2.0.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  57.1 KiB
 libpkgconf                       i686   1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.7 KiB
 libpsl                           i686   0.21.5-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  75.9 KiB
 libpwquality                     i686   1.4.5-6.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 410.6 KiB
 libselinux                       i686   3.6-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 196.3 KiB
 libsemanage                      i686   3.6-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 308.1 KiB
 libsepol                         i686   3.6-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 865.5 KiB
 libsmartcols                     i686   2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143.4 KiB
 libssh                           i686   0.10.6-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 563.2 KiB
 libssh-config                    noarch 0.10.6-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                        i686   14.0.1-0.3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 libtasn1                         i686   4.19.0-3.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.9 KiB
 libtirpc                         i686   1.3.4-1.rc1.fc40           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 213.9 KiB
 libunistring                     i686   1.1-5.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libutempter                      i686   1.2.1-10.fc39              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  56.1 KiB
 libuuid                          i686   2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.7 KiB
 libverto                         i686   0.3.2-6.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.7 KiB
 libxcrypt                        i686   4.4.36-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 278.2 KiB
 libxml2                          i686   2.12.4-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 libzstd                          i686   1.5.5-4.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 719.2 KiB
 lua-libs                         i686   5.4.6-3.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 312.6 KiB
 lua-srpm-macros                  noarch 1-9.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                         i686   1.9.4-4.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.7 KiB
 mpfr                             i686   4.2.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 958.6 KiB
 ncurses-base                     noarch 6.4-9.20240113.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.2 KiB
 ncurses-libs                     i686   6.4-9.20240113.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 962.8 KiB
 ocaml-srpm-macros                noarch 9-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros             noarch 2-14.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 104.0   B
 openldap                         i686   2.6.6-1.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 682.8 KiB
 openssl-libs                     i686   1:3.1.4-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.0 MiB
 p11-kit                          i686   0.25.3-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 p11-kit-trust                    i686   0.25.3-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 385.8 KiB
 package-notes-srpm-macros        noarch 0.5-9.fc39                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                              i686   1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 pam-libs                         i686   1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120.7 KiB
 pcre2                            i686   10.42-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 636.1 KiB
 pcre2-syntax                     noarch 10.42-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.1 KiB
 perl-srpm-macros                 noarch 1-51.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                          i686   1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.3 KiB
 pkgconf-m4                       noarch 1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.9 KiB
 pkgconf-pkg-config               i686   1.9.5-2.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0   B
 popt                             i686   1.19-3.fc39                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.9 KiB
 publicsuffix-list-dafsa          noarch 20240107-1.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.5 KiB
 pyproject-srpm-macros            noarch 1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 KiB
 python-srpm-macros               noarch 3.12-7.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  50.1 KiB
 qt5-srpm-macros                  noarch 5.15.12-1.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0   B
 qt6-srpm-macros                  noarch 6.6.1-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                         i686   8.2-7.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 457.5 KiB
 rpm                              i686   4.19.1-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.9 MiB
 rpm-build-libs                   i686   4.19.1-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.2 KiB
 rpm-libs                         i686   4.19.1-2.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 792.8 KiB
 rpm-sequoia                      i686   1.6.0-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 rust-srpm-macros                 noarch 25.2-2.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.1 KiB
 setup                            noarch 2.14.5-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB
 sqlite-libs                      i686   3.45.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 systemd-libs                     i686   255.3-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 util-linux-core                  i686   2.39.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 xxhash-libs                      i686   0.8.2-1.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 119.8 KiB
 xz-libs                          i686   5.4.5-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.2 KiB
 zig-srpm-macros                  noarch 1-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                              i686   3.0-39.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 711.1 KiB
 zlib-ng-compat                   i686   2.1.6-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.5 KiB
 zstd                             i686   1.5.5-4.fc39               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
Installing groups:                                                                                                                         
 build                                                                                                                                     

Transaction Summary:
 Installing:      152 packages

Total size of inbound packages is 52 MiB. Need to download 52 MiB.
After this operation 174 MiB will be used (install 174 MiB, remove 0 B).
[  1/152] bzip2-0:1.0.8-16.fc39.i686    100% |   1.4 MiB/s |  52.9 KiB |  00m00s
[  2/152] coreutils-0:9.4-3.fc40.i686   100% |  25.9 MiB/s |   1.2 MiB |  00m00s
[  3/152] bash-0:5.2.26-1.fc40.i686     100% |  34.8 MiB/s |   1.8 MiB |  00m00s
[  4/152] diffutils-0:3.10-3.fc39.i686  100% |  42.7 MiB/s | 393.7 KiB |  00m00s
[  5/152] fedora-release-0:40-0.29.noar 100% |   2.4 MiB/s |  10.0 KiB |  00m00s
[  6/152] cpio-0:2.15-1.fc40.i686       100% |  14.9 MiB/s | 290.5 KiB |  00m00s
[  7/152] glibc-minimal-langpack-0:2.38 100% |  11.8 MiB/s |  96.5 KiB |  00m00s
[  8/152] findutils-1:4.9.0-6.fc40.i686 100% |  32.1 MiB/s | 492.3 KiB |  00m00s
[  9/152] gawk-0:5.3.0-1.fc40.i686      100% |  69.6 MiB/s |   1.0 MiB |  00m00s
[ 10/152] grep-0:3.11-5.fc40.i686       100% |  28.7 MiB/s | 293.7 KiB |  00m00s
[ 11/152] gzip-0:1.12-6.fc39.i686       100% |  19.2 MiB/s | 157.6 KiB |  00m00s
[ 12/152] info-0:7.1-1.fc40.i686        100% |  22.8 MiB/s | 186.6 KiB |  00m00s
[ 13/152] patch-0:2.7.6-22.fc39.i686    100% |  22.4 MiB/s | 137.9 KiB |  00m00s
[ 14/152] redhat-rpm-config-0:280-1.fc4 100% |  14.7 MiB/s |  75.2 KiB |  00m00s
[ 15/152] rpm-build-0:4.19.1-2.fc40.i68 100% |  10.0 MiB/s |  71.9 KiB |  00m00s
[ 16/152] sed-0:4.8-14.fc39.i686        100% |  36.6 MiB/s | 299.9 KiB |  00m00s
[ 17/152] unzip-0:6.0-62.fc39.i686      100% |  21.9 MiB/s | 179.6 KiB |  00m00s
[ 18/152] tar-2:1.35-2.fc40.i686        100% |  56.3 MiB/s | 864.3 KiB |  00m00s
[ 19/152] shadow-utils-2:4.14.0-2.fc40. 100% |  60.1 MiB/s |   1.2 MiB |  00m00s
[ 20/152] which-0:2.21-40.fc39.i686     100% |   5.8 MiB/s |  41.9 KiB |  00m00s
[ 21/152] util-linux-0:2.39.3-4.fc40.i6 100% |  94.9 MiB/s |   1.1 MiB |  00m00s
[ 22/152] xz-0:5.4.5-1.fc40.i686        100% |  47.5 MiB/s | 534.7 KiB |  00m00s
[ 23/152] xz-libs-0:5.4.5-1.fc40.i686   100% |  16.5 MiB/s | 118.2 KiB |  00m00s
[ 24/152] audit-libs-0:4.0-7.fc40.i686  100% |  17.7 MiB/s | 127.1 KiB |  00m00s
[ 25/152] authselect-libs-0:1.5.0-1.fc4 100% |  33.0 MiB/s | 236.4 KiB |  00m00s
[ 26/152] glibc-0:2.38.9000-35.fc40.i68 100% |  95.0 MiB/s |   2.0 MiB |  00m00s
[ 27/152] libblkid-0:2.39.3-4.fc40.i686 100% |  15.5 MiB/s | 126.8 KiB |  00m00s
[ 28/152] libcap-ng-0:0.8.4-2.fc40.i686 100% |   5.4 MiB/s |  33.1 KiB |  00m00s
[ 29/152] libfdisk-0:2.39.3-4.fc40.i686 100% |  24.4 MiB/s | 175.1 KiB |  00m00s
[ 30/152] libmount-0:2.39.3-4.fc40.i686 100% |  22.5 MiB/s | 161.0 KiB |  00m00s
[ 31/152] libselinux-0:3.6-2.fc40.i686  100% |  13.0 MiB/s |  92.8 KiB |  00m00s
[ 32/152] libsmartcols-0:2.39.3-4.fc40. 100% |  13.6 MiB/s |  69.4 KiB |  00m00s
[ 33/152] libutempter-0:1.2.1-10.fc39.i 100% |   4.3 MiB/s |  26.6 KiB |  00m00s
[ 34/152] libuuid-0:2.39.3-4.fc40.i686  100% |   5.7 MiB/s |  29.1 KiB |  00m00s
[ 35/152] ncurses-libs-0:6.4-9.20240113 100% |  43.1 MiB/s | 353.4 KiB |  00m00s
[ 36/152] pam-libs-0:1.6.0-1.fc40.i686  100% |   8.3 MiB/s |  59.6 KiB |  00m00s
[ 37/152] pam-0:1.6.0-1.fc40.i686       100% |  51.8 MiB/s | 530.0 KiB |  00m00s
[ 38/152] readline-0:8.2-7.fc40.i686    100% |  23.7 MiB/s | 218.2 KiB |  00m00s
[ 39/152] util-linux-core-0:2.39.3-4.fc 100% |  49.2 MiB/s | 503.5 KiB |  00m00s
[ 40/152] systemd-libs-0:255.3-1.fc40.i 100% |  56.1 MiB/s | 747.1 KiB |  00m00s
[ 41/152] zlib-ng-compat-0:2.1.6-1.fc40 100% |  15.8 MiB/s |  80.8 KiB |  00m00s
[ 42/152] bzip2-libs-0:1.0.8-16.fc39.i6 100% |   6.8 MiB/s |  41.5 KiB |  00m00s
[ 43/152] libacl-0:2.3.2-1.fc40.i686    100% |   3.6 MiB/s |  25.8 KiB |  00m00s
[ 44/152] libcap-0:2.69-1.fc40.i686     100% |  11.7 MiB/s |  84.0 KiB |  00m00s
[ 45/152] libgcc-0:14.0.1-0.3.fc40.i686 100% |  13.4 MiB/s | 109.8 KiB |  00m00s
[ 46/152] lz4-libs-0:1.9.4-4.fc39.i686  100% |  11.4 MiB/s |  70.1 KiB |  00m00s
[ 47/152] libzstd-0:1.5.5-4.fc39.i686   100% |  28.3 MiB/s | 289.9 KiB |  00m00s
[ 48/152] libattr-0:2.5.2-1.fc40.i686   100% |   3.0 MiB/s |  18.4 KiB |  00m00s
[ 49/152] libeconf-0:0.5.2-1.fc40.i686  100% |   5.2 MiB/s |  32.0 KiB |  00m00s
[ 50/152] libsemanage-0:3.6-1.fc40.i686 100% |  20.4 MiB/s | 125.2 KiB |  00m00s
[ 51/152] setup-0:2.14.5-1.fc40.noarch  100% |  28.9 MiB/s | 148.1 KiB |  00m00s
[ 52/152] libxcrypt-0:4.4.36-4.fc40.i68 100% |  19.9 MiB/s | 122.0 KiB |  00m00s
[ 53/152] debugedit-0:5.0-12.fc40.i686  100% |  11.2 MiB/s |  80.0 KiB |  00m00s
[ 54/152] elfutils-0:0.190-4.fc40.i686  100% |  46.2 MiB/s | 568.0 KiB |  00m00s
[ 55/152] elfutils-libelf-0:0.190-4.fc4 100% |  16.4 MiB/s | 200.9 KiB |  00m00s
[ 56/152] file-0:5.45-1.fc40.i686       100% |   5.3 MiB/s |  49.2 KiB |  00m00s
[ 57/152] pkgconf-pkg-config-0:1.9.5-2. 100% |   1.2 MiB/s |   9.6 KiB |  00m00s
[ 58/152] binutils-0:2.41-30.fc40.i686  100% | 157.5 MiB/s |   5.8 MiB |  00m00s
[ 59/152] popt-0:1.19-3.fc39.i686       100% |   6.0 MiB/s |  61.6 KiB |  00m00s
[ 60/152] rpm-0:4.19.1-2.fc40.i686      100% |  38.0 MiB/s | 506.5 KiB |  00m00s
[ 61/152] rpm-build-libs-0:4.19.1-2.fc4 100% |  12.5 MiB/s | 102.0 KiB |  00m00s
[ 62/152] rpm-libs-0:4.19.1-2.fc40.i686 100% |  37.0 MiB/s | 341.0 KiB |  00m00s
[ 63/152] zstd-0:1.5.5-4.fc39.i686      100% |  44.1 MiB/s | 451.2 KiB |  00m00s
[ 64/152] ansible-srpm-macros-0:1-12.fc 100% |   3.4 MiB/s |  20.9 KiB |  00m00s
[ 65/152] glibc-gconv-extra-0:2.38.9000 100% |  91.5 MiB/s |   1.6 MiB |  00m00s
[ 66/152] efi-srpm-macros-0:5-9.fc39.no 100% |   5.4 MiB/s |  22.2 KiB |  00m00s
[ 67/152] dwz-0:0.15-3.fc39.i686        100% |  16.9 MiB/s | 138.6 KiB |  00m00s
[ 68/152] fonts-srpm-macros-1:2.0.5-12. 100% |   5.2 MiB/s |  26.5 KiB |  00m00s
[ 69/152] forge-srpm-macros-0:0.2.0-1.f 100% |   3.0 MiB/s |  18.5 KiB |  00m00s
[ 70/152] fpc-srpm-macros-0:1.3-8.fc39. 100% |   1.0 MiB/s |   7.4 KiB |  00m00s
[ 71/152] ghc-srpm-macros-0:1.6.1-3.fc4 100% |   1.3 MiB/s |   8.1 KiB |  00m00s
[ 72/152] gnat-srpm-macros-0:6-3.fc39.n 100% |   1.7 MiB/s |   8.8 KiB |  00m00s
[ 73/152] go-srpm-macros-0:3.3.1-1.fc40 100% |   5.4 MiB/s |  27.7 KiB |  00m00s
[ 74/152] kernel-srpm-macros-0:1.0-20.f 100% |   3.4 MiB/s |  10.5 KiB |  00m00s
[ 75/152] lua-srpm-macros-0:1-9.fc39.no 100% |   2.1 MiB/s |   8.6 KiB |  00m00s
[ 76/152] ocaml-srpm-macros-0:9-1.fc40. 100% |   2.2 MiB/s |   9.0 KiB |  00m00s
[ 77/152] openblas-srpm-macros-0:2-14.f 100% |   1.8 MiB/s |   7.5 KiB |  00m00s
[ 78/152] package-notes-srpm-macros-0:0 100% |   2.7 MiB/s |  11.2 KiB |  00m00s
[ 79/152] perl-srpm-macros-0:1-51.fc39. 100% |   2.0 MiB/s |   8.0 KiB |  00m00s
[ 80/152] pyproject-srpm-macros-0:1.12. 100% |   2.2 MiB/s |  13.6 KiB |  00m00s
[ 81/152] python-srpm-macros-0:3.12-7.f 100% |   4.7 MiB/s |  23.8 KiB |  00m00s
[ 82/152] qt5-srpm-macros-0:5.15.12-1.f 100% |   1.6 MiB/s |   8.4 KiB |  00m00s
[ 83/152] qt6-srpm-macros-0:6.6.1-3.fc4 100% |   2.1 MiB/s |   8.8 KiB |  00m00s
[ 84/152] zig-srpm-macros-0:1-1.fc40.no 100% |   2.6 MiB/s |   8.0 KiB |  00m00s
[ 85/152] rust-srpm-macros-0:25.2-2.fc4 100% |   3.2 MiB/s |  13.0 KiB |  00m00s
[ 86/152] pkgconf-0:1.9.5-2.fc39.i686   100% |   8.3 MiB/s |  42.7 KiB |  00m00s
[ 87/152] zip-0:3.0-39.fc40.i686        100% |  37.3 MiB/s | 267.2 KiB |  00m00s
[ 88/152] pkgconf-m4-0:1.9.5-2.fc39.noa 100% |   3.4 MiB/s |  13.9 KiB |  00m00s
[ 89/152] libpkgconf-0:1.9.5-2.fc39.i68 100% |   6.7 MiB/s |  41.1 KiB |  00m00s
[ 90/152] ed-0:1.20-1.fc40.i686         100% |  13.2 MiB/s |  81.2 KiB |  00m00s
[ 91/152] authselect-0:1.5.0-1.fc40.i68 100% |  14.2 MiB/s | 144.9 KiB |  00m00s
[ 92/152] gdbm-1:1.23-4.fc39.i686       100% |  16.3 MiB/s | 150.1 KiB |  00m00s
[ 93/152] gdbm-libs-1:1.23-4.fc39.i686  100% |   8.3 MiB/s |  59.5 KiB |  00m00s
[ 94/152] libnsl2-0:2.0.1-1.fc40.i686   100% |   5.0 MiB/s |  30.5 KiB |  00m00s
[ 95/152] libpwquality-0:1.4.5-6.fc39.i 100% |  13.3 MiB/s | 108.9 KiB |  00m00s
[ 96/152] libtirpc-0:1.3.4-1.rc1.fc40.i 100% |  12.4 MiB/s | 101.6 KiB |  00m00s
[ 97/152] ca-certificates-0:2023.2.62_v 100% |  93.6 MiB/s | 862.6 KiB |  00m00s
[ 98/152] openssl-libs-1:3.1.4-1.fc40.i 100% | 111.9 MiB/s |   2.1 MiB |  00m00s
[ 99/152] crypto-policies-0:20231204-1. 100% |   9.6 MiB/s |  68.7 KiB |  00m00s
[100/152] ncurses-base-0:6.4-9.20240113 100% |  12.4 MiB/s |  63.5 KiB |  00m00s
[101/152] krb5-libs-0:1.21.2-3.fc40.i68 100% |  78.5 MiB/s | 803.4 KiB |  00m00s
[102/152] libcom_err-0:1.47.0-2.fc39.i6 100% |   3.7 MiB/s |  26.4 KiB |  00m00s
[103/152] libsepol-0:3.6-1.fc40.i686    100% |  42.9 MiB/s | 351.4 KiB |  00m00s
[104/152] pcre2-0:10.42-2.fc40.i686     100% |  32.2 MiB/s | 231.0 KiB |  00m00s
[105/152] cracklib-0:2.9.11-2.fc39.i686 100% |  13.5 MiB/s |  82.9 KiB |  00m00s
[106/152] libxml2-0:2.12.4-1.fc40.i686  100% |  88.6 MiB/s | 725.7 KiB |  00m00s
[107/152] keyutils-libs-0:1.6.3-1.fc40. 100% |   5.2 MiB/s |  31.8 KiB |  00m00s
[108/152] libverto-0:0.3.2-6.fc39.i686  100% |   4.1 MiB/s |  21.0 KiB |  00m00s
[109/152] glibc-common-0:2.38.9000-35.f 100% |  53.9 MiB/s | 386.0 KiB |  00m00s
[110/152] basesystem-0:11-18.fc39.noarc 100% |   1.8 MiB/s |   7.2 KiB |  00m00s
[111/152] gmp-1:6.2.1-5.fc39.i686       100% |  33.2 MiB/s | 305.5 KiB |  00m00s
[112/152] filesystem-0:3.18-6.fc39.i686 100% |  89.0 MiB/s |   1.1 MiB |  00m00s
[113/152] mpfr-0:4.2.1-1.fc40.i686      100% |  33.7 MiB/s | 380.1 KiB |  00m00s
[114/152] file-libs-0:5.45-1.fc40.i686  100% |  75.2 MiB/s | 770.0 KiB |  00m00s
[115/152] fedora-release-common-0:40-0. 100% |   5.0 MiB/s |  20.5 KiB |  00m00s
[116/152] elfutils-libs-0:0.190-4.fc40. 100% |  40.4 MiB/s | 289.7 KiB |  00m00s
[117/152] libstdc++-0:14.0.1-0.3.fc40.i 100% |  83.0 MiB/s | 935.0 KiB |  00m00s
[118/152] coreutils-common-0:9.4-3.fc40 100% | 132.8 MiB/s |   2.1 MiB |  00m00s
[119/152] p11-kit-0:0.25.3-1.fc40.i686  100% |  53.1 MiB/s | 489.7 KiB |  00m00s
[120/152] libarchive-0:3.7.2-1.fc40.i68 100% |   2.0 MiB/s | 449.7 KiB |  00m00s
[121/152] p11-kit-trust-0:0.25.3-1.fc40 100% |  22.8 MiB/s | 139.9 KiB |  00m00s
[122/152] alternatives-0:1.26-1.fc40.i6 100% |   7.8 MiB/s |  39.9 KiB |  00m00s
[123/152] binutils-gold-0:2.41-30.fc40. 100% |  75.4 MiB/s | 849.1 KiB |  00m00s
[124/152] elfutils-debuginfod-client-0: 100% |   4.6 MiB/s |  38.1 KiB |  00m00s
[125/152] jansson-0:2.13.1-7.fc39.i686  100% |   6.4 MiB/s |  45.8 KiB |  00m00s
[126/152] lua-libs-0:5.4.6-3.fc39.i686  100% |  18.2 MiB/s | 149.4 KiB |  00m00s
[127/152] sqlite-libs-0:3.45.0-1.fc40.i 100% |  73.0 MiB/s | 747.7 KiB |  00m00s
[128/152] rpm-sequoia-0:1.6.0-1.fc40.i6 100% |  82.6 MiB/s | 930.4 KiB |  00m00s
[129/152] pcre2-syntax-0:10.42-2.fc40.n 100% |  34.9 MiB/s | 143.1 KiB |  00m00s
[130/152] libgomp-0:14.0.1-0.3.fc40.i68 100% |  40.8 MiB/s | 334.0 KiB |  00m00s
[131/152] libtasn1-0:4.19.0-3.fc39.i686 100% |  14.6 MiB/s |  74.7 KiB |  00m00s
[132/152] fedora-release-identity-basic 100% |   2.6 MiB/s |  10.8 KiB |  00m00s
[133/152] fedora-repos-0:40-0.2.noarch  100% |   2.3 MiB/s |   9.3 KiB |  00m00s
[134/152] libffi-0:3.4.4-5.fc40.i686    100% |   6.1 MiB/s |  37.3 KiB |  00m00s
[135/152] elfutils-default-yama-scope-0 100% |   3.1 MiB/s |  12.8 KiB |  00m00s
[136/152] fedora-gpg-keys-0:40-0.2.noar 100% |  29.1 MiB/s | 119.4 KiB |  00m00s
[137/152] fedora-repos-rawhide-0:40-0.2 100% |   1.7 MiB/s |   8.9 KiB |  00m00s
[138/152] curl-0:8.5.0-2.fc40.i686      100% |  45.6 MiB/s | 373.3 KiB |  00m00s
[139/152] libcurl-0:8.5.0-2.fc40.i686   100% |  45.4 MiB/s | 371.6 KiB |  00m00s
[140/152] xxhash-libs-0:0.8.2-1.fc39.i6 100% |   8.0 MiB/s |  49.4 KiB |  00m00s
[141/152] libbrotli-0:1.1.0-1.fc40.i686 100% |  47.4 MiB/s | 340.0 KiB |  00m00s
[142/152] libidn2-0:2.3.4-3.fc39.i686   100% |  15.5 MiB/s | 111.3 KiB |  00m00s
[143/152] libnghttp2-0:1.59.0-1.fc40.i6 100% |   9.9 MiB/s |  81.0 KiB |  00m00s
[144/152] libpsl-0:0.21.5-1.fc40.i686   100% |  10.4 MiB/s |  64.1 KiB |  00m00s
[145/152] libssh-0:0.10.6-2.fc40.i686   100% |  37.0 MiB/s | 227.1 KiB |  00m00s
[146/152] openldap-0:2.6.6-1.fc39.i686  100% |  44.5 MiB/s | 273.2 KiB |  00m00s
[147/152] cyrus-sasl-lib-0:2.1.28-17.fc 100% |  92.9 MiB/s | 856.2 KiB |  00m00s
[148/152] libevent-0:2.1.12-9.fc39.i686 100% |  38.6 MiB/s | 276.7 KiB |  00m00s
[149/152] libssh-config-0:0.10.6-2.fc40 100% |   2.2 MiB/s |   9.1 KiB |  00m00s
[150/152] publicsuffix-list-dafsa-0:202 100% |  14.2 MiB/s |  58.0 KiB |  00m00s
[151/152] libunistring-0:1.1-5.fc40.i68 100% |  53.8 MiB/s | 551.2 KiB |  00m00s
[152/152] gdb-minimal-0:14.1-7.fc40.i68 100% |  42.8 MiB/s |   4.6 MiB |  00m00s
--------------------------------------------------------------------------------
[152/152] Total                         100% |  85.1 MiB/s |  52.5 MiB |  00m01s
Running transaction
[  1/154] Verify package files          100% | 899.0   B/s | 152.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-6.fc39.i686
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-6.fc39.i686
[  2/154] Prepare transaction           100% |   4.0 KiB/s | 152.0   B |  00m00s
[  3/154] Installing libgcc-0:14.0.1-0. 100% | 256.9 MiB/s | 263.1 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.0.1-0.3.fc40.i686
>>> Stop post-install scriptlet: libgcc-0:14.0.1-0.3.fc40.i686
[  4/154] Installing crypto-policies-0: 100% |  44.4 MiB/s | 181.7 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40
>>> Stop post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40.no
[  5/154] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  6/154] Installing fedora-gpg-keys-0: 100% |  54.6 MiB/s | 167.6 KiB |  00m00s
[  7/154] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/154] Installing fedora-repos-0:40- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[  9/154] Installing fedora-release-com 100% |  22.6 MiB/s |  23.2 KiB |  00m00s
[ 10/154] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 11/154] Installing setup-0:2.14.5-1.f 100% |  64.4 MiB/s | 725.8 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.14.5-1.fc40.noarch
>>> Stop post-install scriptlet: setup-0:2.14.5-1.fc40.noarch
[ 12/154] Installing filesystem-0:3.18- 100% |   3.3 MiB/s | 211.9 KiB |  00m00s
[ 13/154] Installing basesystem-0:11-18 100% |   0.0   B/s | 124.0   B |  00m00s
[ 14/154] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 15/154] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[ 16/154] Installing pcre2-syntax-0:10. 100% | 232.0 MiB/s | 237.6 KiB |  00m00s
[ 17/154] Installing coreutils-common-0 100% | 409.4 MiB/s |  11.5 MiB |  00m00s
[ 18/154] Installing ncurses-base-0:6.4 100% |  85.9 MiB/s | 351.6 KiB |  00m00s
[ 19/154] Installing pkgconf-m4-0:1.9.5 100% |   0.0   B/s |  14.3 KiB |  00m00s
[ 20/154] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.8 KiB |  00m00s
[ 21/154] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[ 22/154] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 768.0   B |  00m00s
[ 23/154] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[ 24/154] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[ 25/154] Installing openblas-srpm-macr 100% |   0.0   B/s | 384.0   B |  00m00s
[ 26/154] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[ 27/154] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[ 28/154] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[ 29/154] Installing ghc-srpm-macros-0: 100% |   0.0   B/s | 648.0   B |  00m00s
[ 30/154] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[ 31/154] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[ 32/154] Installing glibc-minimal-lang 100% | 121.1 KiB/s | 124.0   B |  00m00s
[ 33/154] Installing ncurses-libs-0:6.4 100% | 236.7 MiB/s | 969.4 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.38.9000-35.fc40.i686
>>> Stop pre-install scriptlet: glibc-0:2.38.9000-35.fc40.i686
[ 34/154] Installing glibc-0:2.38.9000- 100% | 204.3 MiB/s |   5.5 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.38.9000-35.fc40.i686
>>> Stop post-install scriptlet: glibc-0:2.38.9000-35.fc40.i686
[ 35/154] Installing bash-0:5.2.26-1.fc 100% | 377.0 MiB/s |   8.3 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-1.fc40.i686
>>> Stop post-install scriptlet: bash-0:5.2.26-1.fc40.i686
[ 36/154] Installing glibc-common-0:2.3 100% | 202.9 MiB/s |   1.0 MiB |  00m00s
[ 37/154] Installing glibc-gconv-extra- 100% | 209.5 MiB/s |   7.3 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.38.9000-35.fc40.i686
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.38.9000-35.fc40.i686
[ 38/154] Installing zlib-ng-compat-0:2 100% | 142.9 MiB/s | 146.3 KiB |  00m00s
[ 39/154] Installing xz-libs-0:5.4.5-1. 100% | 224.9 MiB/s | 230.3 KiB |  00m00s
[ 40/154] Installing bzip2-libs-0:1.0.8 100% |  75.2 MiB/s |  77.0 KiB |  00m00s
[ 41/154] Installing libuuid-0:2.39.3-4 100% |   0.0   B/s |  34.0 KiB |  00m00s
[ 42/154] Installing readline-0:8.2-7.f 100% | 224.4 MiB/s | 459.6 KiB |  00m00s
[ 43/154] Installing libzstd-0:1.5.5-4. 100% | 351.8 MiB/s | 720.4 KiB |  00m00s
[ 44/154] Installing elfutils-libelf-0: 100% | 331.0 MiB/s |   1.0 MiB |  00m00s
[ 45/154] Installing popt-0:1.19-3.fc39 100% |  69.6 MiB/s | 142.5 KiB |  00m00s
[ 46/154] Installing libstdc++-0:14.0.1 100% | 350.0 MiB/s |   2.8 MiB |  00m00s
[ 47/154] Installing libblkid-0:2.39.3- 100% | 251.0 MiB/s | 257.0 KiB |  00m00s
[ 48/154] Installing libattr-0:2.5.2-1. 100% |   0.0   B/s |  24.8 KiB |  00m00s
[ 49/154] Installing libacl-0:2.3.2-1.f 100% |   0.0   B/s |  40.1 KiB |  00m00s
[ 50/154] Installing libxcrypt-0:4.4.36 100% | 274.3 MiB/s | 280.9 KiB |  00m00s
[ 51/154] Installing gmp-1:6.2.1-5.fc39 100% | 355.4 MiB/s | 727.8 KiB |  00m00s
[ 52/154] Installing lz4-libs-0:1.9.4-4 100% | 130.6 MiB/s | 133.8 KiB |  00m00s
[ 53/154] Installing libeconf-0:0.5.2-1 100% |   0.0   B/s |  56.9 KiB |  00m00s
[ 54/154] Installing gdbm-libs-1:1.23-4 100% | 127.0 MiB/s | 130.1 KiB |  00m00s
[ 55/154] Installing mpfr-0:4.2.1-1.fc4 100% | 312.6 MiB/s | 960.2 KiB |  00m00s
[ 56/154] Installing gawk-0:5.3.0-1.fc4 100% | 290.6 MiB/s |   1.7 MiB |  00m00s
[ 57/154] Installing dwz-0:0.15-3.fc39. 100% | 299.1 MiB/s | 306.2 KiB |  00m00s
[ 58/154] Installing unzip-0:6.0-62.fc3 100% | 195.1 MiB/s | 399.6 KiB |  00m00s
[ 59/154] Installing file-libs-0:5.45-1 100% | 621.6 MiB/s |   9.9 MiB |  00m00s
[ 60/154] Installing file-0:5.45-1.fc40 100% |  93.8 MiB/s |  96.0 KiB |  00m00s
[ 61/154] Installing libcap-ng-0:0.8.4- 100% |   0.0   B/s |  73.6 KiB |  00m00s
[ 62/154] Installing audit-libs-0:4.0-7 100% | 320.2 MiB/s | 327.9 KiB |  00m00s
[ 63/154] Installing pam-libs-0:1.6.0-1 100% | 120.2 MiB/s | 123.1 KiB |  00m00s
[ 64/154] Installing libcap-0:2.69-1.fc 100% | 205.7 MiB/s | 210.6 KiB |  00m00s
[ 65/154] Installing systemd-libs-0:255 100% | 321.7 MiB/s |   1.9 MiB |  00m00s
[ 66/154] Installing libsmartcols-0:2.3 100% | 141.2 MiB/s | 144.5 KiB |  00m00s
[ 67/154] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  63.5 KiB |  00m00s
[ 68/154] Installing libsepol-0:3.6-1.f 100% | 423.1 MiB/s | 866.4 KiB |  00m00s
[ 69/154] Installing pcre2-0:10.42-2.fc 100% | 311.3 MiB/s | 637.5 KiB |  00m00s
[ 70/154] Installing libselinux-0:3.6-2 100% | 193.0 MiB/s | 197.6 KiB |  00m00s
[ 71/154] Installing sed-0:4.8-14.fc39. 100% | 196.6 MiB/s | 805.1 KiB |  00m00s
[ 72/154] Installing grep-0:3.11-5.fc40 100% | 251.6 MiB/s |   1.0 MiB |  00m00s
[ 73/154] Installing findutils-1:4.9.0- 100% | 248.6 MiB/s |   1.5 MiB |  00m00s
[ 74/154] Installing xz-0:5.4.5-1.fc40. 100% | 286.3 MiB/s |   2.0 MiB |  00m00s
[ 75/154] Installing libmount-0:2.39.3- 100% | 375.5 MiB/s | 384.5 KiB |  00m00s
[ 76/154] Installing alternatives-0:1.2 100% |   0.0   B/s |  59.1 KiB |  00m00s
[ 77/154] Installing jansson-0:2.13.1-7 100% |   0.0   B/s |  88.9 KiB |  00m00s
[ 78/154] Installing lua-libs-0:5.4.6-3 100% | 306.4 MiB/s | 313.8 KiB |  00m00s
[ 79/154] Installing libtasn1-0:4.19.0- 100% | 176.5 MiB/s | 180.7 KiB |  00m00s
[ 80/154] Installing libunistring-0:1.1 100% | 348.4 MiB/s |   1.7 MiB |  00m00s
[ 81/154] Installing elfutils-default-y 100% | 340.5 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.noar
[ 82/154] Installing libidn2-0:2.3.4-3. 100% | 105.6 MiB/s | 324.3 KiB |  00m00s
[ 83/154] Installing libpsl-0:0.21.5-1. 100% |  75.2 MiB/s |  77.0 KiB |  00m00s
[ 84/154] Installing util-linux-core-0: 100% | 209.6 MiB/s |   1.3 MiB |  00m00s
[ 85/154] Installing tar-2:1.35-2.fc40. 100% | 333.7 MiB/s |   3.0 MiB |  00m00s
[ 86/154] Installing libsemanage-0:3.6- 100% | 151.3 MiB/s | 309.8 KiB |  00m00s
[ 87/154] Installing shadow-utils-2:4.1 100% | 137.4 MiB/s |   4.0 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-10.fc39.i686
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-10.fc39.i686
[ 88/154] Installing libutempter-0:1.2. 100% |  56.8 MiB/s |  58.1 KiB |  00m00s
[ 89/154] Installing zip-0:3.0-39.fc40. 100% | 232.7 MiB/s | 714.8 KiB |  00m00s
[ 90/154] Installing gdbm-1:1.23-4.fc39 100% | 227.8 MiB/s | 466.6 KiB |  00m00s
[ 91/154] Installing cyrus-sasl-lib-0:2 100% | 353.3 MiB/s |   2.5 MiB |  00m00s
[ 92/154] Installing zstd-0:1.5.5-4.fc3 100% | 382.8 MiB/s |   1.5 MiB |  00m00s
[ 93/154] Installing libfdisk-0:2.39.3- 100% | 401.6 MiB/s | 411.2 KiB |  00m00s
[ 94/154] Installing bzip2-0:1.0.8-16.f 100% |  96.1 MiB/s |  98.4 KiB |  00m00s
[ 95/154] Installing libxml2-0:2.12.4-1 100% | 358.1 MiB/s |   1.8 MiB |  00m00s
[ 96/154] Installing sqlite-libs-0:3.45 100% | 368.0 MiB/s |   1.5 MiB |  00m00s
[ 97/154] Installing ed-0:1.20-1.fc40.i 100% | 140.1 MiB/s | 143.5 KiB |  00m00s
[ 98/154] Installing patch-0:2.7.6-22.f 100% | 276.8 MiB/s | 283.4 KiB |  00m00s
[ 99/154] Installing cpio-0:2.15-1.fc40 100% | 276.3 MiB/s |   1.1 MiB |  00m00s
[100/154] Installing diffutils-0:3.10-3 100% | 316.6 MiB/s |   1.6 MiB |  00m00s
[101/154] Installing libpkgconf-0:1.9.5 100% |   0.0   B/s |  81.8 KiB |  00m00s
[102/154] Installing pkgconf-0:1.9.5-2. 100% |  78.9 MiB/s |  80.8 KiB |  00m00s
[103/154] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[104/154] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  59.0 KiB |  00m00s
[105/154] Installing libverto-0:0.3.2-6 100% |   0.0   B/s |  30.5 KiB |  00m00s
[106/154] Installing libgomp-0:14.0.1-0 100% | 254.9 MiB/s | 522.1 KiB |  00m00s
[107/154] Installing libffi-0:3.4.4-5.f 100% |  76.3 MiB/s |  78.1 KiB |  00m00s
[108/154] Installing p11-kit-0:0.25.3-1 100% | 269.4 MiB/s |   2.4 MiB |  00m00s
[109/154] Installing p11-kit-trust-0:0. 100% |  47.3 MiB/s | 387.5 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.i686
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.i686
[110/154] Installing openssl-libs-1:3.1 100% | 314.9 MiB/s |   6.0 MiB |  00m00s
[111/154] Installing coreutils-0:9.4-3. 100% | 245.4 MiB/s |   5.6 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.n
>>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noar
[112/154] Installing ca-certificates-0: 100% |   2.4 MiB/s |   2.3 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.
>>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noa
[113/154] Installing krb5-libs-0:1.21.2 100% | 259.0 MiB/s |   2.3 MiB |  00m00s
[114/154] Installing libtirpc-0:1.3.4-1 100% | 210.7 MiB/s | 215.7 KiB |  00m00s
[115/154] Installing gzip-0:1.12-6.fc39 100% | 185.8 MiB/s | 380.6 KiB |  00m00s
>>> Running pre-install scriptlet: authselect-libs-0:1.5.0-1.fc40.i686
>>> Stop pre-install scriptlet: authselect-libs-0:1.5.0-1.fc40.i686
[116/154] Installing authselect-libs-0: 100% | 196.5 MiB/s |   1.0 MiB |  00m00s
[117/154] Installing authselect-0:1.5.0 100% |  82.0 MiB/s | 168.0 KiB |  00m00s
[118/154] Installing cracklib-0:2.9.11- 100% |  81.7 MiB/s | 251.0 KiB |  00m00s
[119/154] Installing libpwquality-0:1.4 100% | 103.2 MiB/s | 422.8 KiB |  00m00s
[120/154] Installing libnsl2-0:2.0.1-1. 100% |  56.9 MiB/s |  58.2 KiB |  00m00s
[121/154] Installing pam-0:1.6.0-1.fc40 100% | 143.9 MiB/s |   1.7 MiB |  00m00s
[122/154] Installing libssh-0:0.10.6-2. 100% | 276.0 MiB/s | 565.3 KiB |  00m00s
[123/154] Installing libarchive-0:3.7.2 100% | 325.6 MiB/s |   1.0 MiB |  00m00s
[124/154] Installing rpm-sequoia-0:1.6. 100% | 364.9 MiB/s |   2.6 MiB |  00m00s
[125/154] Installing rpm-libs-0:4.19.1- 100% | 387.9 MiB/s | 794.4 KiB |  00m00s
[126/154] Installing libevent-0:2.1.12- 100% | 317.6 MiB/s | 975.7 KiB |  00m00s
[127/154] Installing openldap-0:2.6.6-1 100% | 223.5 MiB/s | 686.5 KiB |  00m00s
[128/154] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s | 121.2 KiB |  00m00s
[129/154] Installing libbrotli-0:1.1.0- 100% | 279.2 MiB/s | 857.8 KiB |  00m00s
[130/154] Installing libnghttp2-0:1.59. 100% | 162.6 MiB/s | 166.6 KiB |  00m00s
[131/154] Installing libcurl-0:8.5.0-2. 100% | 391.5 MiB/s | 801.8 KiB |  00m00s
[132/154] Installing elfutils-debuginfo 100% |  59.8 MiB/s |  61.2 KiB |  00m00s
[133/154] Installing elfutils-libs-0:0. 100% | 346.9 MiB/s | 710.5 KiB |  00m00s
[134/154] Installing binutils-gold-0:2. 100% | 162.8 MiB/s |   2.1 MiB |  00m00s
>>> Running post-install scriptlet: binutils-gold-0:2.41-30.fc40.i686
>>> Stop post-install scriptlet: binutils-gold-0:2.41-30.fc40.i686
[135/154] Installing binutils-0:2.41-30 100% | 339.7 MiB/s |  24.5 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.41-30.fc40.i686
>>> Stop post-install scriptlet: binutils-0:2.41-30.fc40.i686
[136/154] Installing elfutils-0:0.190-4 100% | 291.3 MiB/s |   2.6 MiB |  00m00s
[137/154] Installing gdb-minimal-0:14.1 100% | 359.4 MiB/s |  12.9 MiB |  00m00s
[138/154] Installing debugedit-0:5.0-12 100% | 190.8 MiB/s | 195.4 KiB |  00m00s
[139/154] Installing rpm-build-libs-0:4 100% | 205.1 MiB/s | 210.0 KiB |  00m00s
[140/154] Installing curl-0:8.5.0-2.fc4 100% |  64.8 MiB/s | 795.9 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.1-2.fc40.i686
>>> Stop pre-install scriptlet: rpm-0:4.19.1-2.fc40.i686
[141/154] Installing rpm-0:4.19.1-2.fc4 100% | 159.1 MiB/s |   2.4 MiB |  00m00s
[142/154] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[143/154] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[144/154] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[145/154] Installing fonts-srpm-macros- 100% |   0.0   B/s |  56.5 KiB |  00m00s
[146/154] Installing forge-srpm-macros- 100% |  37.7 MiB/s |  38.6 KiB |  00m00s
[147/154] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  61.6 KiB |  00m00s
[148/154] Installing python-srpm-macros 100% |   0.0   B/s |  51.3 KiB |  00m00s
[149/154] Installing redhat-rpm-config- 100% |  92.6 MiB/s | 189.6 KiB |  00m00s
[150/154] Installing rpm-build-0:4.19.1 100% |  79.5 MiB/s | 162.8 KiB |  00m00s
[151/154] Installing pyproject-srpm-mac 100% |   2.0 MiB/s |   2.1 KiB |  00m00s
[152/154] Installing util-linux-0:2.39. 100% | 195.3 MiB/s |   3.3 MiB |  00m00s
[153/154] Installing which-0:2.21-40.fc 100% |  79.1 MiB/s |  81.0 KiB |  00m00s
[154/154] Installing info-0:7.1-1.fc40. 100% | 304.1 KiB/s | 372.8 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-6.fc39.i686
>>> Stop post-transaction scriptlet: filesystem-0:3.18-6.fc39.i686
>>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-1.fc40.i686
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-1.fc40.i686
>>> Running post-transaction scriptlet: rpm-0:4.19.1-2.fc40.i686
>>> Stop post-transaction scriptlet: rpm-0:4.19.1-2.fc40.i686
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.i686
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.i686
>>> Running trigger-install scriptlet: info-0:7.1-1.fc40.i686
>>> Stop trigger-install scriptlet: info-0:7.1-1.fc40.i686
Warning: skipped PGP checks for 152 package(s).
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.26-1.fc40.i686
ansible-srpm-macros-1-12.fc40.noarch
audit-libs-4.0-7.fc40.i686
authselect-1.5.0-1.fc40.i686
authselect-libs-1.5.0-1.fc40.i686
basesystem-11-18.fc39.noarch
bash-5.2.26-1.fc40.i686
binutils-2.41-30.fc40.i686
binutils-gold-2.41-30.fc40.i686
bzip2-1.0.8-16.fc39.i686
bzip2-libs-1.0.8-16.fc39.i686
ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch
coreutils-9.4-3.fc40.i686
coreutils-common-9.4-3.fc40.i686
cpio-2.15-1.fc40.i686
cracklib-2.9.11-2.fc39.i686
crypto-policies-20231204-1.git1e3a2e4.fc40.noarch
curl-8.5.0-2.fc40.i686
cyrus-sasl-lib-2.1.28-17.fc40.i686
debugedit-5.0-12.fc40.i686
diffutils-3.10-3.fc39.i686
dwz-0.15-3.fc39.i686
ed-1.20-1.fc40.i686
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.190-4.fc40.i686
elfutils-debuginfod-client-0.190-4.fc40.i686
elfutils-default-yama-scope-0.190-4.fc40.noarch
elfutils-libelf-0.190-4.fc40.i686
elfutils-libs-0.190-4.fc40.i686
fedora-gpg-keys-40-0.2.noarch
fedora-release-40-0.29.noarch
fedora-release-common-40-0.29.noarch
fedora-release-identity-basic-40-0.29.noarch
fedora-repos-40-0.2.noarch
fedora-repos-rawhide-40-0.2.noarch
file-5.45-1.fc40.i686
file-libs-5.45-1.fc40.i686
filesystem-3.18-6.fc39.i686
findutils-4.9.0-6.fc40.i686
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.2.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.3.0-1.fc40.i686
gdb-minimal-14.1-7.fc40.i686
gdbm-1.23-4.fc39.i686
gdbm-libs-1.23-4.fc39.i686
ghc-srpm-macros-1.6.1-3.fc40.noarch
glibc-2.38.9000-35.fc40.i686
glibc-common-2.38.9000-35.fc40.i686
glibc-gconv-extra-2.38.9000-35.fc40.i686
glibc-minimal-langpack-2.38.9000-35.fc40.i686
gmp-6.2.1-5.fc39.i686
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.3.1-1.fc40.noarch
grep-3.11-5.fc40.i686
gzip-1.12-6.fc39.i686
info-7.1-1.fc40.i686
jansson-2.13.1-7.fc39.i686
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.3-1.fc40.i686
krb5-libs-1.21.2-3.fc40.i686
libacl-2.3.2-1.fc40.i686
libarchive-3.7.2-1.fc40.i686
libattr-2.5.2-1.fc40.i686
libblkid-2.39.3-4.fc40.i686
libbrotli-1.1.0-1.fc40.i686
libcap-2.69-1.fc40.i686
libcap-ng-0.8.4-2.fc40.i686
libcom_err-1.47.0-2.fc39.i686
libcurl-8.5.0-2.fc40.i686
libeconf-0.5.2-1.fc40.i686
libevent-2.1.12-9.fc39.i686
libfdisk-2.39.3-4.fc40.i686
libffi-3.4.4-5.fc40.i686
libgcc-14.0.1-0.3.fc40.i686
libgomp-14.0.1-0.3.fc40.i686
libidn2-2.3.4-3.fc39.i686
libmount-2.39.3-4.fc40.i686
libnghttp2-1.59.0-1.fc40.i686
libnsl2-2.0.1-1.fc40.i686
libpkgconf-1.9.5-2.fc39.i686
libpsl-0.21.5-1.fc40.i686
libpwquality-1.4.5-6.fc39.i686
libselinux-3.6-2.fc40.i686
libsemanage-3.6-1.fc40.i686
libsepol-3.6-1.fc40.i686
libsmartcols-2.39.3-4.fc40.i686
libssh-0.10.6-2.fc40.i686
libssh-config-0.10.6-2.fc40.noarch
libstdc++-14.0.1-0.3.fc40.i686
libtasn1-4.19.0-3.fc39.i686
libtirpc-1.3.4-1.rc1.fc40.i686
libunistring-1.1-5.fc40.i686
libutempter-1.2.1-10.fc39.i686
libuuid-2.39.3-4.fc40.i686
libverto-0.3.2-6.fc39.i686
libxcrypt-4.4.36-4.fc40.i686
libxml2-2.12.4-1.fc40.i686
libzstd-1.5.5-4.fc39.i686
lua-libs-5.4.6-3.fc39.i686
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.i686
mpfr-4.2.1-1.fc40.i686
ncurses-base-6.4-9.20240113.fc40.noarch
ncurses-libs-6.4-9.20240113.fc40.i686
ocaml-srpm-macros-9-1.fc40.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.i686
openssl-libs-3.1.4-1.fc40.i686
p11-kit-0.25.3-1.fc40.i686
p11-kit-trust-0.25.3-1.fc40.i686
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.6.0-1.fc40.i686
pam-libs-1.6.0-1.fc40.i686
patch-2.7.6-22.fc39.i686
pcre2-10.42-2.fc40.i686
pcre2-syntax-10.42-2.fc40.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.i686
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.i686
popt-1.19-3.fc39.i686
publicsuffix-list-dafsa-20240107-1.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-7.fc40.noarch
qt5-srpm-macros-5.15.12-1.fc40.noarch
qt6-srpm-macros-6.6.1-3.fc40.noarch
readline-8.2-7.fc40.i686
redhat-rpm-config-280-1.fc40.noarch
rpm-4.19.1-2.fc40.i686
rpm-build-4.19.1-2.fc40.i686
rpm-build-libs-4.19.1-2.fc40.i686
rpm-libs-4.19.1-2.fc40.i686
rpm-sequoia-1.6.0-1.fc40.i686
rust-srpm-macros-25.2-2.fc40.noarch
sed-4.8-14.fc39.i686
setup-2.14.5-1.fc40.noarch
shadow-utils-4.14.0-2.fc40.i686
sqlite-libs-3.45.0-1.fc40.i686
systemd-libs-255.3-1.fc40.i686
tar-1.35-2.fc40.i686
unzip-6.0-62.fc39.i686
util-linux-2.39.3-4.fc40.i686
util-linux-core-2.39.3-4.fc40.i686
which-2.21-40.fc39.i686
xxhash-libs-0.8.2-1.fc39.i686
xz-5.4.5-1.fc40.i686
xz-libs-5.4.5-1.fc40.i686
zig-srpm-macros-1-1.fc40.noarch
zip-3.0-39.fc40.i686
zlib-ng-compat-2.1.6-1.fc40.i686
zstd-1.5.5-4.fc39.i686
Start: buildsrpm
Start: rpmbuild -bs
warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1706313600
Wrote: /builddir/build/SRPMS/seqan-1.4.2-53.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1706326045.169591/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-gx43d9sg/seqan/seqan.spec) Config(child) 0 minutes 58 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/seqan-1.4.2-53.fc40.src.rpm)  Config(fedora-rawhide-i686)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1706326045.169591/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1706326045.169591/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1706326045.169591/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1-2.fc40.x86_64
  rpm-sequoia-1.5.0-2.fc40.x86_64
  python3-dnf-4.18.2-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
  dnf5-5.1.11-1.fc40.x86_64
  dnf5-plugins-5.1.11-1.fc40.x86_64
Finish: chroot init
Start: build phase for seqan-1.4.2-53.fc40.src.rpm
Start: build setup for seqan-1.4.2-53.fc40.src.rpm
warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1706313600
Wrote: /builddir/build/SRPMS/seqan-1.4.2-53.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Updating and loading repositories:
 local                                  100% | 236.8 KiB/s |   3.8 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 158.5 KiB/s |   4.1 KiB |  00m00s
 Copr repository                        100% |  66.8 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                     Arch   Version                          Repository                                                         Size
Installing:                                                                                                                                
 boost-devel                i686   1.83.0-2.fc40                    copr_base                                                     143.0 MiB
 bzip2-devel                i686   1.0.8-16.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.8 KiB
 cmake                      i686   3.27.7-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.4 MiB
 coin-or-lemon-devel        i686   1.3.1-29.fc40                    copr_base                                                       2.5 MiB
 gcc                        i686   14.0.1-0.3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100.8 MiB
 gcc-c++                    i686   14.0.1-0.3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.6 MiB
 libstdc++-static           i686   14.0.1-0.3.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.7 MiB
 llvm-devel                 i686   17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.3 MiB
 make                       i686   1:4.4.1-2.fc39                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 python3-devel              i686   3.12.1-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 python3-setuptools         noarch 68.2.2-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   7.1 MiB
 qt-devel                   i686   1:4.8.7-74.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.1 MiB
 zlib-ng-compat-devel       i686   2.1.6-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.4 KiB
Installing dependencies:                                                                                                                   
 Lmod                       i686   8.7.32-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 MUMPS                      i686   5.6.2-3.fc40                     copr_base                                                      10.3 MiB
 MUMPS-common               noarch 5.6.2-3.fc40                     copr_base                                                     948.0 KiB
 abattis-cantarell-vf-fonts noarch 0.301-10.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.3 KiB
 alsa-lib                   i686   1.2.10-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
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 libxkbcommon               i686   1.6.0-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 334.9 KiB
 libxkbcommon-x11           i686   1.6.0-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  34.8 KiB
 libxml2-devel              i686   2.12.4-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.4 MiB
 libxshmfence               i686   1.3.2-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.6 KiB
 llvm                       i686   17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 116.7 MiB
 llvm-googletest            i686   17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 llvm-libs                  i686   17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.0 MiB
 llvm-static                i686   17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 237.5 MiB
 llvm-test                  i686   17.0.6-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 lua                        i686   5.4.6-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 604.3 KiB
 lua-filesystem             i686   1.8.0-9.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  63.8 KiB
 lua-json                   noarch 1.3.4-4.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  59.3 KiB
 lua-lpeg                   i686   1.0.2-11.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 175.8 KiB
 lua-posix                  i686   36.2.1-3.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 586.4 KiB
 lua-term                   i686   0.08-1.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.1 KiB
 mesa-libEGL                i686   24.0.0~rc2-4.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 310.5 KiB
 mesa-libGL                 i686   24.0.0~rc2-4.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493.0 KiB
 mesa-libGLU                i686   9.0.3-1.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 369.3 KiB
 mesa-libGLU-devel          i686   9.0.3-1.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  17.0 KiB
 mesa-libgbm                i686   24.0.0~rc2-4.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  64.4 KiB
 mesa-libglapi              i686   24.0.0~rc2-4.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143.7 KiB
 metis                      i686   5.1.0.3-3.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 mp                         i686   3.1.0-44.20200303git7fd4828.fc40 copr_base                                                       2.8 MiB
 mpdecimal                  i686   2.5.1-7.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204.1 KiB
 mtdev                      i686   1.1.6-6.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  28.5 KiB
 ncurses-c++-libs           i686   6.4-9.20240113.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.2 KiB
 ncurses-devel              i686   6.4-9.20240113.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 859.6 KiB
 nettle                     i686   3.9.1-2.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 792.2 KiB
 openblas                   i686   0.3.26-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  96.0 KiB
 openblas-openmp            i686   0.3.26-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.0 MiB
 pcre2-devel                i686   10.42-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 pcre2-utf16                i686   10.42-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 573.4 KiB
 pcre2-utf32                i686   10.42-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 541.3 KiB
 pixman                     i686   0.43.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 757.6 KiB
 procps-ng                  i686   4.0.4-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 pyproject-rpm-macros       noarch 1.12.0-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.8 KiB
 python-pip-wheel           noarch 23.3.2-1.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 python-rpm-macros          noarch 3.12-7.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.1 KiB
 python3                    i686   3.12.1-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  31.0 KiB
 python3-libs               i686   3.12.1-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.5 MiB
 python3-numpy              i686   1:1.26.2-4.fc40                  copr_base                                                      36.8 MiB
 python3-packaging          noarch 23.2-2.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 421.1 KiB
 python3-rpm-generators     noarch 14-8.fc40                        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  82.3 KiB
 python3-rpm-macros         noarch 3.12-7.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.4 KiB
 qt                         i686   1:4.8.7-74.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  18.2 MiB
 qt-common                  noarch 1:4.8.7-74.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 qt-settings                noarch 39.1-3.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 qt-x11                     i686   1:4.8.7-74.fc39                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  37.6 MiB
 qt5-qtbase                 i686   5.15.12-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.6 MiB
 qt5-qtbase-common          noarch 5.15.12-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.0   B
 qt5-qtbase-gui             i686   5.15.12-1.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.5 MiB
 rhash                      i686   1.4.3-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 392.2 KiB
 scotch                     i686   7.0.4-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 760.1 KiB
 scotch-devel               i686   7.0.4-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  94.3 KiB
 suitesparse                i686   5.13.0-4.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.6 MiB
 sysprof-capture-devel      i686   45.1-1.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.7 KiB
 tcl                        i686   1:8.6.13-1.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.3 MiB
 tzdata                     noarch 2023d-2.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 unixODBC                   i686   2.3.12-2.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 vim-filesystem             noarch 2:9.1.031-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.0   B
 xcb-util                   i686   0.4.1-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.6 KiB
 xcb-util-image             i686   0.4.1-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.5 KiB
 xcb-util-keysyms           i686   0.4.1-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  16.0 KiB
 xcb-util-renderutil        i686   0.3.10-3.fc39                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  23.7 KiB
 xcb-util-wm                i686   0.4.2-3.fc39                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  95.9 KiB
 xkeyboard-config           noarch 2.40-2.fc40                      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.6 MiB
 xml-common                 noarch 0.6.3-62.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  78.4 KiB
 xorg-x11-proto-devel       noarch 2023.2-3.fc40                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 xz-devel                   i686   5.4.5-1.fc40                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.8 KiB

Transaction Summary:
 Installing:      258 packages

Total size of inbound packages is 326 MiB. Need to download 326 MiB.
After this operation 1 GiB will be used (install 1 GiB, remove 0 B).
[  1/258] bzip2-devel-0:1.0.8-16.fc39.i 100% |   4.7 MiB/s | 213.7 KiB |  00m00s
[  2/258] coin-or-lemon-devel-0:1.3.1-2 100% |   6.2 MiB/s | 287.0 KiB |  00m00s
[  3/258] cmake-0:3.27.7-1.fc40.i686    100% |  66.1 MiB/s |  10.0 MiB |  00m00s
[  4/258] gcc-c++-0:14.0.1-0.3.fc40.i68 100% | 194.9 MiB/s |  14.2 MiB |  00m00s
[  5/258] libstdc++-static-0:14.0.1-0.3 100% |  64.8 MiB/s | 994.7 KiB |  00m00s
[  6/258] llvm-devel-0:17.0.6-2.fc40.i6 100% | 100.7 MiB/s |   3.6 MiB |  00m00s
[  7/258] make-1:4.4.1-2.fc39.i686      100% |  24.0 MiB/s | 588.9 KiB |  00m00s
[  8/258] python3-devel-0:3.12.1-2.fc40 100% |  15.7 MiB/s | 273.9 KiB |  00m00s
[  9/258] gcc-0:14.0.1-0.3.fc40.i686    100% | 136.1 MiB/s |  36.5 MiB |  00m00s
[ 10/258] python3-setuptools-0:68.2.2-1 100% |  28.1 MiB/s |   1.4 MiB |  00m00s
[ 11/258] zlib-ng-compat-devel-0:2.1.6- 100% |   2.4 MiB/s |  36.2 KiB |  00m00s
[ 12/258] boost-0:1.83.0-2.fc40.i686    100% |   4.7 MiB/s |  14.5 KiB |  00m00s
[ 13/258] boost-numpy3-0:1.83.0-2.fc40. 100% |  10.0 MiB/s |  30.9 KiB |  00m00s
[ 14/258] coin-or-lemon-0:1.3.1-29.fc40 100% |   4.5 MiB/s |  88.2 KiB |  00m00s
[ 15/258] boost-devel-0:1.83.0-2.fc40.i 100% |  26.5 MiB/s |  11.8 MiB |  00m00s
[ 16/258] qt-devel-1:4.8.7-74.fc39.i686 100% | 111.1 MiB/s |  10.2 MiB |  00m00s
[ 17/258] boost-atomic-0:1.83.0-2.fc40. 100% | 642.7 KiB/s |  19.9 KiB |  00m00s
[ 18/258] boost-chrono-0:1.83.0-2.fc40. 100% |   3.0 MiB/s |  27.8 KiB |  00m00s
[ 19/258] boost-context-0:1.83.0-2.fc40 100% |   5.7 MiB/s |  17.5 KiB |  00m00s
[ 20/258] boost-container-0:1.83.0-2.fc 100% |  10.0 MiB/s |  40.8 KiB |  00m00s
[ 21/258] boost-contract-0:1.83.0-2.fc4 100% |   7.9 MiB/s |  48.6 KiB |  00m00s
[ 22/258] boost-coroutine-0:1.83.0-2.fc 100% |   5.2 MiB/s |  21.2 KiB |  00m00s
[ 23/258] boost-date-time-0:1.83.0-2.fc 100% |   3.9 MiB/s |  16.1 KiB |  00m00s
[ 24/258] boost-filesystem-0:1.83.0-2.f 100% |  14.7 MiB/s |  75.3 KiB |  00m00s
[ 25/258] boost-graph-0:1.83.0-2.fc40.i 100% |  25.9 MiB/s | 159.1 KiB |  00m00s
[ 26/258] boost-fiber-0:1.83.0-2.fc40.i 100% |   4.9 MiB/s |  45.6 KiB |  00m00s
[ 27/258] boost-iostreams-0:1.83.0-2.fc 100% |  10.8 MiB/s |  44.4 KiB |  00m00s
[ 28/258] boost-json-0:1.83.0-2.fc40.i6 100% |  17.6 MiB/s | 162.1 KiB |  00m00s
[ 29/258] boost-locale-0:1.83.0-2.fc40. 100% |  23.3 MiB/s | 238.2 KiB |  00m00s
[ 30/258] boost-nowide-0:1.83.0-2.fc40. 100% |   4.2 MiB/s |  21.5 KiB |  00m00s
[ 31/258] boost-math-0:1.83.0-2.fc40.i6 100% |  25.9 MiB/s | 211.8 KiB |  00m00s
[ 32/258] boost-log-0:1.83.0-2.fc40.i68 100% |  32.5 MiB/s | 533.2 KiB |  00m00s
[ 33/258] boost-python3-0:1.83.0-2.fc40 100% |  17.0 MiB/s | 104.1 KiB |  00m00s
[ 34/258] boost-random-0:1.83.0-2.fc40. 100% |   5.0 MiB/s |  25.5 KiB |  00m00s
[ 35/258] boost-program-options-0:1.83. 100% |  14.3 MiB/s | 117.4 KiB |  00m00s
[ 36/258] boost-stacktrace-0:1.83.0-2.f 100% |   4.4 MiB/s |  31.3 KiB |  00m00s
[ 37/258] boost-regex-0:1.83.0-2.fc40.i 100% |  11.4 MiB/s | 117.0 KiB |  00m00s
[ 38/258] boost-serialization-0:1.83.0- 100% |  13.0 MiB/s | 146.9 KiB |  00m00s
[ 39/258] boost-system-0:1.83.0-2.fc40. 100% |   2.2 MiB/s |  16.1 KiB |  00m00s
[ 40/258] boost-thread-0:1.83.0-2.fc40. 100% |   9.2 MiB/s |  65.7 KiB |  00m00s
[ 41/258] boost-test-0:1.83.0-2.fc40.i6 100% |  27.8 MiB/s | 256.5 KiB |  00m00s
[ 42/258] boost-timer-0:1.83.0-2.fc40.i 100% |   3.7 MiB/s |  22.7 KiB |  00m00s
[ 43/258] boost-type_erasure-0:1.83.0-2 100% |   8.7 MiB/s |  35.7 KiB |  00m00s
[ 44/258] boost-wave-0:1.83.0-2.fc40.i6 100% |  29.9 MiB/s | 214.0 KiB |  00m00s
[ 45/258] cmake-filesystem-0:3.27.7-1.f 100% |   2.1 MiB/s |  19.1 KiB |  00m00s
[ 46/258] coin-or-Cgl-0:0.60.3-12.fc40. 100% |  45.2 MiB/s | 462.7 KiB |  00m00s
[ 47/258] coin-or-CoinUtils-0:2.11.4-12 100% |  51.0 MiB/s | 521.9 KiB |  00m00s
[ 48/258] coin-or-Cbc-0:2.10.5-16.fc40. 100% |  33.8 MiB/s | 898.8 KiB |  00m00s
[ 49/258] coin-or-Clp-0:1.17.6-17.fc40. 100% |  39.8 MiB/s |   1.0 MiB |  00m00s
[ 50/258] glpk-0:5.0-10.fc40.i686       100% |  30.3 MiB/s | 403.8 KiB |  00m00s
[ 51/258] coin-or-Osi-0:0.108.6-11.fc40 100% |  14.0 MiB/s | 344.3 KiB |  00m00s
[ 52/258] flexiblas-0:3.4.1-3.fc40.i686 100% |   1.9 MiB/s |  25.4 KiB |  00m00s
[ 53/258] flexiblas-openblas-openmp-0:3 100% |   3.0 MiB/s |  18.3 KiB |  00m00s
[ 54/258] MUMPS-common-0:5.6.2-3.fc40.n 100% |  37.5 MiB/s | 883.1 KiB |  00m00s
[ 55/258] MUMPS-0:5.6.2-3.fc40.i686     100% |  56.5 MiB/s |   2.1 MiB |  00m00s
[ 56/258] suitesparse-0:5.13.0-4.fc40.i 100% |  39.6 MiB/s | 811.3 KiB |  00m00s
[ 57/258] flexiblas-netlib-0:3.4.1-3.fc 100% |  44.3 MiB/s |   3.1 MiB |  00m00s
[ 58/258] libnauty-0:2.8.8-1.fc40.i686  100% |  45.6 MiB/s | 654.2 KiB |  00m00s
[ 59/258] python3-0:3.12.1-2.fc40.i686  100% |   2.4 MiB/s |  26.5 KiB |  00m00s
[ 60/258] mp-0:3.1.0-44.20200303git7fd4 100% |  21.1 MiB/s | 950.2 KiB |  00m00s
[ 61/258] libicu-0:73.2-3.fc40.i686     100% | 159.4 MiB/s |  10.7 MiB |  00m00s
[ 62/258] libicu-devel-0:73.2-3.fc40.i6 100% |  29.6 MiB/s | 849.1 KiB |  00m00s
[ 63/258] libquadmath-devel-0:14.0.1-0. 100% |   3.3 MiB/s |  23.3 KiB |  00m00s
[ 64/258] libgfortran-0:14.0.1-0.3.fc40 100% |  67.8 MiB/s | 833.2 KiB |  00m00s
[ 65/258] metis-0:5.1.0.3-3.fc40.i686   100% |  37.8 MiB/s | 580.9 KiB |  00m00s
[ 66/258] scotch-0:7.0.4-2.fc40.i686    100% |  22.0 MiB/s | 293.2 KiB |  00m00s
[ 67/258] scotch-devel-0:7.0.4-2.fc40.i 100% |   2.2 MiB/s |  24.7 KiB |  00m00s
[ 68/258] libICE-devel-0:1.1.1-1.fc40.i 100% |   5.0 MiB/s |  45.8 KiB |  00m00s
[ 69/258] libSM-devel-0:1.2.4-1.fc40.i6 100% | 904.0 KiB/s |  11.8 KiB |  00m00s
[ 70/258] libX11-devel-0:1.8.7-1.fc40.i 100% |  35.6 MiB/s | 912.0 KiB |  00m00s
[ 71/258] libXcursor-devel-0:1.2.1-5.fc 100% |   1.7 MiB/s |  28.9 KiB |  00m00s
[ 72/258] libXext-devel-0:1.3.5-5.fc40. 100% |   7.0 MiB/s |  72.1 KiB |  00m00s
[ 73/258] libXfixes-devel-0:6.0.1-1.fc4 100% |   1.0 MiB/s |  12.4 KiB |  00m00s
[ 74/258] libXft-devel-0:2.3.8-4.fc40.i 100% |   4.4 MiB/s |  36.2 KiB |  00m00s
[ 75/258] libXi-devel-0:1.8.1-3.fc40.i6 100% |   8.4 MiB/s | 103.0 KiB |  00m00s
[ 76/258] libXinerama-devel-0:1.1.5-4.f 100% |   1.1 MiB/s |  12.9 KiB |  00m00s
[ 77/258] libXrandr-devel-0:1.5.4-1.fc4 100% |   2.7 MiB/s |  19.1 KiB |  00m00s
[ 78/258] libXrender-devel-0:0.9.11-4.f 100% |   2.0 MiB/s |  18.8 KiB |  00m00s
[ 79/258] libXt-devel-0:1.3.0-1.fc40.i6 100% |  23.4 MiB/s | 408.1 KiB |  00m00s
[ 80/258] libXv-devel-0:1.0.12-1.fc40.i 100% |   2.3 MiB/s |  38.4 KiB |  00m00s
[ 81/258] libglvnd-devel-1:1.7.0-1.fc40 100% |  13.9 MiB/s | 156.9 KiB |  00m00s
[ 82/258] mesa-libGLU-devel-0:9.0.3-1.f 100% |   1.4 MiB/s |  11.8 KiB |  00m00s
[ 83/258] qt-1:4.8.7-74.fc39.i686       100% | 123.5 MiB/s |   5.1 MiB |  00m00s
[ 84/258] xorg-x11-proto-devel-0:2023.2 100% |  25.7 MiB/s | 262.7 KiB |  00m00s
[ 85/258] dbus-libs-1:1.14.10-1.fc40.i6 100% |  13.6 MiB/s | 167.1 KiB |  00m00s
[ 86/258] qt-x11-1:4.8.7-74.fc39.i686   100% | 170.9 MiB/s |  14.2 MiB |  00m00s
[ 87/258] glib2-0:2.79.1-1.fc40.i686    100% | 118.0 MiB/s |   3.1 MiB |  00m00s
[ 88/258] qt-common-1:4.8.7-74.fc39.noa 100% | 853.8 KiB/s |   7.7 KiB |  00m00s
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[255/258] gcc-plugin-annobin-0:14.0.1-0 100% |   6.8 MiB/s |  34.6 KiB |  00m00s
[256/258] annobin-plugin-gcc-0:12.38-1. 100% |  55.0 MiB/s | 957.8 KiB |  00m00s
[257/258] cmake-rpm-macros-0:3.27.7-1.f 100% |   2.3 MiB/s |  18.5 KiB |  00m00s
[258/258] annobin-docs-0:12.38-1.fc40.n 100% |  17.5 MiB/s |  89.6 KiB |  00m00s
--------------------------------------------------------------------------------
[258/258] Total                         100% | 159.5 MiB/s | 325.9 MiB |  00m02s
Running transaction
[  1/260] Verify package files          100% | 253.0   B/s | 258.0   B |  00m01s
[  2/260] Prepare transaction           100% |   1.2 KiB/s | 258.0   B |  00m00s
[  3/260] Installing xorg-x11-proto-dev 100% | 219.5 MiB/s |   1.8 MiB |  00m00s
[  4/260] Installing cmake-filesystem-0 100% |   7.1 MiB/s |   7.3 KiB |  00m00s
[  5/260] Installing zlib-ng-compat-dev 100% |   0.0   B/s | 104.5 KiB |  00m00s
[  6/260] Installing python-rpm-macros- 100% |   0.0   B/s |  22.8 KiB |  00m00s
[  7/260] Installing fonts-filesystem-1 100% |   0.0   B/s | 788.0   B |  00m00s
[  8/260] Installing python3-rpm-macros 100% |   6.5 MiB/s |   6.7 KiB |  00m00s
[  9/260] Installing libstdc++-devel-0: 100% | 332.8 MiB/s |  14.3 MiB |  00m00s
[ 10/260] Installing qt-settings-0:39.1 100% |   0.0   B/s |   1.7 KiB |  00m00s
[ 11/260] Installing pyproject-rpm-macr 100% |   0.0   B/s | 100.8 KiB |  00m00s
[ 12/260] Installing abattis-cantarell- 100% | 189.5 MiB/s | 194.1 KiB |  00m00s
[ 13/260] Installing annobin-docs-0:12. 100% |   0.0   B/s |  96.6 KiB |  00m00s
[ 14/260] Installing libblkid-devel-0:2 100% |  19.9 MiB/s |  20.4 KiB |  00m00s
[ 15/260] Installing hwdata-0:0.378-1.f 100% | 500.0 MiB/s |   9.0 MiB |  00m00s
[ 16/260] Installing libsepol-devel-0:3 100% |  62.4 MiB/s | 127.7 KiB |  00m00s
[ 17/260] Installing libwacom-data-0:2. 100% |  82.9 MiB/s | 678.8 KiB |  00m00s
[ 18/260] Installing vim-filesystem-2:9 100% |   4.6 MiB/s |   4.7 KiB |  00m00s
[ 19/260] Installing emacs-filesystem-1 100% |   0.0   B/s | 544.0   B |  00m00s
[ 20/260] Installing sysprof-capture-de 100% | 233.0 MiB/s | 238.5 KiB |  00m00s
[ 21/260] Installing libffi-devel-0:3.4 100% |  17.0 MiB/s |  34.9 KiB |  00m00s
[ 22/260] Installing kernel-headers-0:6 100% | 193.4 MiB/s |   6.4 MiB |  00m00s
[ 23/260] Installing glibc-headers-x86- 100% | 173.3 MiB/s |   2.3 MiB |  00m00s
[ 24/260] Installing libxcrypt-devel-0: 100% |  31.8 MiB/s |  32.6 KiB |  00m00s
[ 25/260] Installing glibc-devel-0:2.38 100% |  33.8 MiB/s |  34.6 KiB |  00m00s
[ 26/260] Installing google-noto-fonts- 100% |   0.0   B/s |  18.1 KiB |  00m00s
[ 27/260] Installing google-noto-sans-v 100% | 307.8 MiB/s |   1.2 MiB |  00m00s
[ 28/260] Installing default-fonts-core 100% |  17.8 MiB/s |  18.2 KiB |  00m00s
[ 29/260] Installing xkeyboard-config-0 100% | 316.1 MiB/s |   6.6 MiB |  00m00s
[ 30/260] Installing xz-devel-0:5.4.5-1 100% | 126.9 MiB/s | 259.9 KiB |  00m00s
[ 31/260] Installing libxml2-devel-0:2. 100% | 379.6 MiB/s |   3.4 MiB |  00m00s
[ 32/260] Installing openblas-0:0.3.26- 100% |  31.8 MiB/s |  97.8 KiB |  00m00s
[ 33/260] Installing tzdata-0:2023d-2.f 100% |  61.6 MiB/s |   1.9 MiB |  00m00s
[ 34/260] Installing python-pip-wheel-0 100% | 190.0 MiB/s |   1.5 MiB |  00m00s
>>> Running pre-install scriptlet: xml-common-0:0.6.3-62.fc40.noarch
>>> Stop pre-install scriptlet: xml-common-0:0.6.3-62.fc40.noarch
[ 35/260] Installing xml-common-0:0.6.3 100% |  79.2 MiB/s |  81.1 KiB |  00m00s
[ 36/260] Installing libuuid-devel-0:2. 100% |  15.5 MiB/s |  15.9 KiB |  00m00s
[ 37/260] Installing libX11-common-0:1. 100% | 131.7 MiB/s |   1.2 MiB |  00m00s
[ 38/260] Installing libglvnd-core-deve 100% |   0.0   B/s |  41.1 KiB |  00m00s
[ 39/260] Installing llvm-static-0:17.0 100% | 471.2 MiB/s | 237.5 MiB |  00m01s
[ 40/260] Installing llvm-googletest-0: 100% | 325.7 MiB/s |   2.0 MiB |  00m00s
[ 41/260] Installing gl-manpages-0:1.1- 100% |  70.4 MiB/s |   1.1 MiB |  00m00s
[ 42/260] Installing MUMPS-common-0:5.6 100% | 463.4 MiB/s | 949.0 KiB |  00m00s
[ 43/260] Installing bzip2-devel-0:1.0. 100% | 303.5 MiB/s | 310.7 KiB |  00m00s
[ 44/260] Installing boost-system-0:1.8 100% |  16.2 MiB/s |  16.6 KiB |  00m00s
[ 45/260] Installing libicu-0:73.2-3.fc 100% | 401.6 MiB/s |  36.5 MiB |  00m00s
[ 46/260] Installing boost-chrono-0:1.8 100% |  36.9 MiB/s |  37.8 KiB |  00m00s
[ 47/260] Installing boost-thread-0:1.8 100% | 133.8 MiB/s | 137.0 KiB |  00m00s
[ 48/260] Installing expat-0:2.5.0-3.fc 100% | 276.7 MiB/s | 283.3 KiB |  00m00s
[ 49/260] Installing libpng-2:1.6.40-1. 100% | 252.3 MiB/s | 258.4 KiB |  00m00s
[ 50/260] Installing libICE-0:1.1.1-1.f 100% | 185.1 MiB/s | 189.5 KiB |  00m00s
[ 51/260] Installing libglvnd-1:1.7.0-1 100% | 540.3 MiB/s | 553.3 KiB |  00m00s
[ 52/260] Installing libSM-0:1.2.4-1.fc 100% |  95.6 MiB/s |  97.9 KiB |  00m00s
[ 53/260] Installing libjpeg-turbo-0:2. 100% | 333.0 MiB/s | 682.0 KiB |  00m00s
[ 54/260] Installing libX11-xcb-0:1.8.7 100% |   0.0   B/s |  15.1 KiB |  00m00s
[ 55/260] Installing libICE-devel-0:1.1 100% | 257.2 MiB/s | 263.4 KiB |  00m00s
[ 56/260] Installing boost-regex-0:1.83 100% | 257.0 MiB/s | 263.2 KiB |  00m00s
[ 57/260] Installing libmpc-0:1.3.1-3.f 100% | 169.4 MiB/s | 173.5 KiB |  00m00s
[ 58/260] Installing dbus-libs-1:1.14.1 100% | 396.0 MiB/s | 405.5 KiB |  00m00s
[ 59/260] Installing libgfortran-0:14.0 100% | 411.5 MiB/s |   2.9 MiB |  00m00s
[ 60/260] Installing boost-context-0:1. 100% |   0.0   B/s |  16.8 KiB |  00m00s
[ 61/260] Installing boost-atomic-0:1.8 100% |   0.0   B/s |  17.1 KiB |  00m00s
[ 62/260] Installing libSM-devel-0:1.2. 100% |   0.0   B/s |  19.7 KiB |  00m00s
[ 63/260] Installing boost-filesystem-0 100% | 144.3 MiB/s | 147.8 KiB |  00m00s
[ 64/260] Installing libglvnd-opengl-1: 100% | 133.9 MiB/s | 137.1 KiB |  00m00s
[ 65/260] Installing libicu-devel-0:73. 100% | 294.1 MiB/s |   5.6 MiB |  00m00s
[ 66/260] Installing libxkbcommon-0:1.6 100% | 328.7 MiB/s | 336.6 KiB |  00m00s
[ 67/260] Installing mesa-libglapi-0:24 100% | 141.2 MiB/s | 144.6 KiB |  00m00s
[ 68/260] Installing libxshmfence-0:1.3 100% |   0.0   B/s |  15.4 KiB |  00m00s
[ 69/260] Installing gettext-libs-0:0.2 100% | 304.8 MiB/s | 936.4 KiB |  00m00s
[ 70/260] Installing graphite2-0:1.3.14 100% | 192.0 MiB/s | 196.6 KiB |  00m00s
[ 71/260] Installing libevdev-0:1.13.1- 100% |   0.0   B/s |  86.4 KiB |  00m00s
[ 72/260] Installing libXau-0:1.0.11-4. 100% |  66.0 MiB/s |  67.6 KiB |  00m00s
[ 73/260] Installing libxcb-0:1.16-2.fc 100% | 227.0 MiB/s |   1.1 MiB |  00m00s
[ 74/260] Installing libX11-0:1.8.7-1.f 100% | 337.5 MiB/s |   1.3 MiB |  00m00s
[ 75/260] Installing libXext-0:1.3.5-5. 100% |   0.0   B/s |  98.2 KiB |  00m00s
[ 76/260] Installing libXrender-0:0.9.1 100% |   0.0   B/s |  54.5 KiB |  00m00s
[ 77/260] Installing libXfixes-0:6.0.1- 100% |   0.0   B/s |  30.9 KiB |  00m00s
[ 78/260] Installing libXcursor-0:1.2.1 100% |   0.0   B/s |  50.4 KiB |  00m00s
[ 79/260] Installing libXrandr-0:1.5.4- 100% |   0.0   B/s |  60.3 KiB |  00m00s
[ 80/260] Installing libXinerama-0:1.1. 100% |   0.0   B/s |  19.3 KiB |  00m00s
[ 81/260] Installing libXi-0:1.8.1-3.fc 100% |   0.0   B/s |  81.0 KiB |  00m00s
[ 82/260] Installing libwayland-server- 100% |  80.6 MiB/s |  82.6 KiB |  00m00s
[ 83/260] Installing pcre2-utf16-0:10.4 100% | 560.7 MiB/s | 574.2 KiB |  00m00s
[ 84/260] Installing libtool-ltdl-0:2.4 100% |   0.0   B/s |  70.5 KiB |  00m00s
[ 85/260] Installing libedit-0:3.1-48.2 100% | 243.1 MiB/s | 248.9 KiB |  00m00s
[ 86/260] Installing llvm-libs-0:17.0.6 100% | 422.9 MiB/s | 118.0 MiB |  00m00s
[ 87/260] Installing libquadmath-0:14.0 100% | 251.2 MiB/s | 514.5 KiB |  00m00s
[ 88/260] Installing scotch-0:7.0.4-2.f 100% | 248.2 MiB/s | 762.4 KiB |  00m00s
[ 89/260] Installing boost-date-time-0: 100% |   0.0   B/s |  16.6 KiB |  00m00s
[ 90/260] Installing boost-container-0: 100% |   0.0   B/s |  69.8 KiB |  00m00s
[ 91/260] Installing libXau-devel-0:1.0 100% |   2.7 MiB/s |   8.2 KiB |  00m00s
[ 92/260] Installing libxcb-devel-0:1.1 100% |  74.5 MiB/s |   3.1 MiB |  00m00s
[ 93/260] Installing libX11-devel-0:1.8 100% |  80.0 MiB/s |   1.1 MiB |  00m00s
[ 94/260] Installing libXext-devel-0:1. 100% |  54.1 MiB/s | 110.8 KiB |  00m00s
[ 95/260] Installing libXrender-devel-0 100% |   0.0   B/s |  50.9 KiB |  00m00s
[ 96/260] Installing libXfixes-devel-0: 100% |   0.0   B/s |   9.9 KiB |  00m00s
[ 97/260] Installing libXcursor-devel-0 100% |  31.8 MiB/s |  32.6 KiB |  00m00s
[ 98/260] Installing libXi-devel-0:1.8. 100% |  70.6 MiB/s | 144.6 KiB |  00m00s
[ 99/260] Installing libXrandr-devel-0: 100% |   0.0   B/s |  24.6 KiB |  00m00s
[100/260] Installing libXinerama-devel- 100% |   0.0   B/s |   8.5 KiB |  00m00s
[101/260] Installing graphite2-devel-0: 100% |   0.0   B/s |  50.6 KiB |  00m00s
[102/260] Installing boost-json-0:1.83. 100% | 337.3 MiB/s | 345.4 KiB |  00m00s
[103/260] Installing boost-wave-0:1.83. 100% | 316.3 MiB/s | 647.7 KiB |  00m00s
[104/260] Installing scotch-devel-0:7.0 100% |  96.1 MiB/s |  98.4 KiB |  00m00s
[105/260] Installing unixODBC-0:2.3.12- 100% | 212.4 MiB/s |   1.3 MiB |  00m00s
[106/260] Installing libXv-0:1.0.12-1.f 100% |   0.0   B/s |  30.5 KiB |  00m00s
[107/260] Installing libXv-devel-0:1.0. 100% |  44.9 MiB/s |  46.0 KiB |  00m00s
[108/260] Installing libXxf86vm-0:1.1.5 100% |   0.0   B/s |  25.8 KiB |  00m00s
[109/260] Installing libXt-0:1.3.0-1.fc 100% | 215.2 MiB/s | 440.8 KiB |  00m00s
[110/260] Installing libXt-devel-0:1.3. 100% | 237.7 MiB/s |   1.7 MiB |  00m00s
[111/260] Installing libxkbcommon-x11-0 100% |   0.0   B/s |  35.7 KiB |  00m00s
[112/260] Installing xcb-util-keysyms-0 100% |   0.0   B/s |  17.1 KiB |  00m00s
[113/260] Installing xcb-util-renderuti 100% |   0.0   B/s |  25.1 KiB |  00m00s
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[116/260] Installing xcb-util-image-0:0 100% |   0.0   B/s |  22.9 KiB |  00m00s
[117/260] Installing mesa-libGLU-0:9.0. 100% | 361.4 MiB/s | 370.1 KiB |  00m00s
[118/260] Installing boost-fiber-0:1.83 100% |  77.1 MiB/s |  78.9 KiB |  00m00s
[119/260] Installing boost-log-0:1.83.0 100% | 371.3 MiB/s |   1.5 MiB |  00m00s
[120/260] Installing boost-coroutine-0: 100% |   0.0   B/s |  21.3 KiB |  00m00s
[121/260] Installing openblas-openmp-0: 100% | 537.6 MiB/s |  22.0 MiB |  00m00s
[122/260] Installing flexiblas-0:3.4.1- 100% |   0.0   B/s |  47.9 KiB |  00m00s
[123/260] Installing flexiblas-openblas 100% |   0.0   B/s |  27.5 KiB |  00m00s
[124/260] Installing flexiblas-netlib-0 100% | 423.1 MiB/s |  11.0 MiB |  00m00s
[125/260] Installing suitesparse-0:5.13 100% | 258.4 MiB/s |   3.6 MiB |  00m00s
[126/260] Installing glpk-0:5.0-10.fc40 100% | 302.0 MiB/s | 927.7 KiB |  00m00s
[127/260] Installing coin-or-CoinUtils- 100% | 304.6 MiB/s |   1.2 MiB |  00m00s
[128/260] Installing coin-or-Osi-0:0.10 100% | 313.9 MiB/s | 964.3 KiB |  00m00s
[129/260] Installing avahi-libs-0:0.8-2 100% | 181.7 MiB/s | 186.1 KiB |  00m00s
[130/260] Installing cpp-0:14.0.1-0.3.f 100% | 372.0 MiB/s |  35.3 MiB |  00m00s
[131/260] Installing boost-graph-0:1.83 100% | 330.3 MiB/s | 338.2 KiB |  00m00s
[132/260] Installing libpng-devel-2:1.6 100% | 287.7 MiB/s | 883.8 KiB |  00m00s
[133/260] Installing boost-locale-0:1.8 100% | 299.9 MiB/s | 614.2 KiB |  00m00s
[134/260] Installing boost-type_erasure 100% |  53.2 MiB/s |  54.4 KiB |  00m00s
[135/260] Installing boost-timer-0:1.83 100% |   0.0   B/s |  25.3 KiB |  00m00s
[136/260] Installing libpciaccess-0:0.1 100% |  52.0 MiB/s |  53.3 KiB |  00m00s
[137/260] Installing libdrm-0:2.4.120-1 100% | 208.0 MiB/s | 425.9 KiB |  00m00s
[138/260] Installing mesa-libgbm-0:24.0 100% |  63.7 MiB/s |  65.2 KiB |  00m00s
[139/260] Installing mesa-libGL-0:24.0. 100% | 241.2 MiB/s | 494.0 KiB |  00m00s
[140/260] Installing libglvnd-glx-1:1.7 100% | 315.1 MiB/s | 645.2 KiB |  00m00s
[141/260] Installing glx-utils-0:9.0.0- 100% | 431.5 MiB/s | 441.9 KiB |  00m00s
[142/260] Installing lua-lpeg-0:1.0.2-1 100% | 173.5 MiB/s | 177.6 KiB |  00m00s
[143/260] Installing lua-json-0:1.3.4-4 100% |  61.6 MiB/s |  63.1 KiB |  00m00s
[144/260] Installing lua-0:5.4.6-3.fc39 100% | 296.5 MiB/s | 607.3 KiB |  00m00s
[145/260] Installing lua-term-0:0.08-1. 100% |  27.5 MiB/s |  28.2 KiB |  00m00s
[146/260] Installing tcl-1:8.6.13-1.fc4 100% | 312.9 MiB/s |   4.4 MiB |  00m00s
[147/260] Installing procps-ng-0:4.0.4- 100% | 211.4 MiB/s |   1.1 MiB |  00m00s
[148/260] Installing lua-posix-0:36.2.1 100% | 146.8 MiB/s | 601.4 KiB |  00m00s
[149/260] Installing lua-filesystem-0:1 100% |  64.4 MiB/s |  66.0 KiB |  00m00s
[150/260] Installing Lmod-0:8.7.32-1.fc 100% |  97.1 MiB/s |   1.3 MiB |  00m00s
>>> Running post-install scriptlet: Lmod-0:8.7.32-1.fc40.i686
>>> Stop post-install scriptlet: Lmod-0:8.7.32-1.fc40.i686
[151/260] Installing gettext-envsubst-0 100% |  69.8 MiB/s |  71.5 KiB |  00m00s
[152/260] Installing gettext-runtime-0: 100% | 113.9 MiB/s | 466.6 KiB |  00m00s
[153/260] Installing gettext-0:0.22-2.f 100% | 332.1 MiB/s |   5.0 MiB |  00m00s
[154/260] Installing libwayland-client- 100% |  56.7 MiB/s |  58.1 KiB |  00m00s
[155/260] Installing mesa-libEGL-0:24.0 100% | 304.2 MiB/s | 311.5 KiB |  00m00s
[156/260] Installing libglvnd-egl-1:1.7 100% |  72.0 MiB/s |  73.7 KiB |  00m00s
[157/260] Installing libglvnd-gles-1:1. 100% |  95.6 MiB/s |  97.9 KiB |  00m00s
[158/260] Installing libglvnd-devel-1:1 100% | 530.1 MiB/s |   2.1 MiB |  00m00s
[159/260] Installing mesa-libGLU-devel- 100% |   0.0   B/s |  17.5 KiB |  00m00s
[160/260] Installing pcre2-utf32-0:10.4 100% | 264.7 MiB/s | 542.1 KiB |  00m00s
[161/260] Installing pcre2-devel-0:10.4 100% | 275.3 MiB/s |   1.9 MiB |  00m00s
[162/260] Installing libselinux-devel-0 100% |  39.2 MiB/s | 160.6 KiB |  00m00s
[163/260] Installing libmount-devel-0:2 100% |   0.0   B/s |  38.1 KiB |  00m00s
[164/260] Installing pixman-0:0.43.0-1. 100% | 370.5 MiB/s | 758.7 KiB |  00m00s
[165/260] Installing nettle-0:3.9.1-2.f 100% | 388.3 MiB/s | 795.3 KiB |  00m00s
[166/260] Installing gnutls-0:3.8.3-2.f 100% | 370.9 MiB/s |   3.3 MiB |  00m00s
[167/260] Installing glib2-0:2.79.1-1.f 100% | 369.6 MiB/s |  14.8 MiB |  00m00s
[168/260] Installing cairo-0:1.18.0-1.f 100% | 204.6 MiB/s |   1.8 MiB |  00m00s
[169/260] Installing harfbuzz-0:8.3.0-2 100% | 327.5 MiB/s |   2.6 MiB |  00m00s
[170/260] Installing freetype-0:2.13.2- 100% | 277.4 MiB/s | 852.2 KiB |  00m00s
[171/260] Installing fontconfig-0:2.15. 100% | 769.2 KiB/s | 785.4 KiB |  00m01s
>>> Running post-install scriptlet: fontconfig-0:2.15.0-1.fc40.i686
>>> Stop post-install scriptlet: fontconfig-0:2.15.0-1.fc40.i686
[172/260] Installing qt-common-1:4.8.7- 100% |  24.2 KiB/s | 124.0   B |  00m00s
>>> Running pre-install scriptlet: qt-1:4.8.7-74.fc39.i686
>>> Stop pre-install scriptlet: qt-1:4.8.7-74.fc39.i686
[173/260] Installing qt-1:4.8.7-74.fc39 100% | 304.4 MiB/s |  18.3 MiB |  00m00s
>>> Running post-install scriptlet: qt-1:4.8.7-74.fc39.i686
>>> Stop post-install scriptlet: qt-1:4.8.7-74.fc39.i686
[174/260] Installing libXft-0:2.3.8-4.f 100% | 165.1 MiB/s | 169.1 KiB |  00m00s
[175/260] Installing harfbuzz-icu-0:8.3 100% |   0.0   B/s |  15.6 KiB |  00m00s
[176/260] Installing libgudev-0:238-2.f 100% |  86.5 MiB/s |  88.6 KiB |  00m00s
[177/260] Installing cups-libs-1:2.4.7- 100% | 218.5 MiB/s | 671.2 KiB |  00m00s
[178/260] Installing mtdev-0:1.1.6-6.fc 100% |   0.0   B/s |  29.8 KiB |  00m00s
[179/260] Installing lcms2-0:2.16-2.fc4 100% | 225.0 MiB/s | 460.8 KiB |  00m00s
[180/260] Installing libmng-0:2.0.3-19. 100% | 274.5 MiB/s | 562.2 KiB |  00m00s
[181/260] Installing duktape-0:2.7.0-5. 100% | 305.3 MiB/s | 625.3 KiB |  00m00s
[182/260] Installing libproxy-0:0.5.3-3 100% | 113.5 MiB/s | 116.2 KiB |  00m00s
[183/260] Installing libwebp-0:1.3.2-4. 100% | 271.6 MiB/s | 834.3 KiB |  00m00s
[184/260] Installing liblerc-0:4.0.0-4. 100% | 314.5 MiB/s | 644.2 KiB |  00m00s
[185/260] Installing jbigkit-libs-0:2.1 100% | 111.5 MiB/s | 114.1 KiB |  00m00s
[186/260] Installing libtiff-0:4.5.0-3. 100% | 299.8 MiB/s |   1.2 MiB |  00m00s
[187/260] Installing ncurses-c++-libs-0 100% |  71.0 MiB/s | 145.3 KiB |  00m00s
[188/260] Installing ncurses-devel-0:6. 100% |  75.6 MiB/s |   1.0 MiB |  00m00s
[189/260] Installing libedit-devel-0:3. 100% |  65.2 MiB/s |  66.8 KiB |  00m00s
[190/260] Installing mpdecimal-0:2.5.1- 100% | 200.4 MiB/s | 205.2 KiB |  00m00s
[191/260] Installing libb2-0:0.98.1-9.f 100% |  10.6 MiB/s |  54.5 KiB |  00m00s
[192/260] Installing python3-libs-0:3.1 100% | 303.1 MiB/s |  40.9 MiB |  00m00s
[193/260] Installing python3-0:3.12.1-2 100% |  32.0 MiB/s |  32.7 KiB |  00m00s
[194/260] Installing python3-packaging- 100% | 210.9 MiB/s | 431.9 KiB |  00m00s
[195/260] Installing cmake-rpm-macros-0 100% |   0.0   B/s |   8.0 KiB |  00m00s
[196/260] Installing boost-python3-0:1. 100% | 243.3 MiB/s | 249.1 KiB |  00m00s
[197/260] Installing llvm-0:17.0.6-2.fc 100% | 415.3 MiB/s | 116.7 MiB |  00m00s
[198/260] Installing python3-rpm-genera 100% |   0.0   B/s |  83.4 KiB |  00m00s
[199/260] Installing llvm-test-0:17.0.6 100% | 319.8 MiB/s |   1.9 MiB |  00m00s
[200/260] Installing glib2-devel-0:2.79 100% | 457.8 MiB/s |  15.1 MiB |  00m00s
[201/260] Installing python3-numpy-1:1. 100% | 363.6 MiB/s |  37.1 MiB |  00m00s
[202/260] Installing boost-numpy3-0:1.8 100% |   0.0   B/s |  57.8 KiB |  00m00s
[203/260] Installing libwacom-0:2.9.0-1 100% |  44.4 MiB/s |  90.9 KiB |  00m00s
[204/260] Installing libinput-0:1.25.0- 100% |  81.3 MiB/s | 582.5 KiB |  00m00s
>>> Running post-install scriptlet: libinput-0:1.25.0-1.fc40.i686
>>> Stop post-install scriptlet: libinput-0:1.25.0-1.fc40.i686
[205/260] Installing alsa-lib-0:1.2.10- 100% | 220.1 MiB/s |   1.5 MiB |  00m00s
[206/260] Installing qt-x11-1:4.8.7-74. 100% | 365.8 MiB/s |  37.7 MiB |  00m00s
[207/260] Installing double-conversion- 100% | 103.2 MiB/s | 105.7 KiB |  00m00s
[208/260] Installing qt5-qtbase-common- 100% |  69.5 KiB/s | 356.0   B |  00m00s
>>> Running pre-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.i686
>>> Stop pre-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.i686
[209/260] Installing qt5-qtbase-0:5.15. 100% | 253.3 MiB/s |  10.6 MiB |  00m00s
>>> Running post-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.i686
>>> Stop post-install scriptlet: qt5-qtbase-0:5.15.12-1.fc40.i686
[210/260] Installing qt5-qtbase-gui-0:5 100% | 352.9 MiB/s |  21.5 MiB |  00m00s
[211/260] Installing gecode-0:6.2.0-13. 100% | 419.8 MiB/s |  14.3 MiB |  00m00s
[212/260] Installing gsl-0:2.7.1-5.fc39 100% | 357.6 MiB/s |   3.6 MiB |  00m00s
[213/260] Installing mp-0:3.1.0-44.2020 100% | 350.7 MiB/s |   2.8 MiB |  00m00s
[214/260] Installing brotli-0:1.1.0-1.f 100% |   0.0   B/s |  27.6 KiB |  00m00s
[215/260] Installing brotli-devel-0:1.1 100% |  66.4 MiB/s |  68.0 KiB |  00m00s
[216/260] Installing harfbuzz-devel-0:8 100% | 424.7 MiB/s |   5.1 MiB |  00m00s
[217/260] Installing freetype-devel-0:2 100% | 436.4 MiB/s |   7.9 MiB |  00m00s
[218/260] Installing fontconfig-devel-0 100% |  37.1 MiB/s | 151.9 KiB |  00m00s
[219/260] Installing libXft-devel-0:2.3 100% |  21.6 MiB/s |  44.3 KiB |  00m00s
[220/260] Installing rhash-0:1.4.3-3.fc 100% | 194.0 MiB/s | 397.4 KiB |  00m00s
[221/260] Installing libuv-1:1.47.0-3.f 100% | 266.5 MiB/s | 545.7 KiB |  00m00s
[222/260] Installing jsoncpp-0:1.9.5-5. 100% | 252.2 MiB/s | 258.2 KiB |  00m00s
[223/260] Installing libubsan-0:14.0.1- 100% | 263.4 MiB/s | 539.4 KiB |  00m00s
[224/260] Installing libatomic-0:14.0.1 100% |   0.0   B/s |  28.4 KiB |  00m00s
[225/260] Installing libasan-0:14.0.1-0 100% | 425.9 MiB/s |   1.7 MiB |  00m00s
[226/260] Installing gc-0:8.2.2-4.fc39. 100% | 125.9 MiB/s | 257.8 KiB |  00m00s
[227/260] Installing guile22-0:2.2.7-9. 100% | 427.3 MiB/s |  40.6 MiB |  00m00s
[228/260] Installing make-1:4.4.1-2.fc3 100% | 302.8 MiB/s |   1.8 MiB |  00m00s
[229/260] Installing gcc-0:14.0.1-0.3.f 100% | 413.4 MiB/s | 100.9 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[230/260] Installing libquadmath-devel- 100% |  22.5 MiB/s |  23.0 KiB |  00m00s
[231/260] Installing gcc-c++-0:14.0.1-0 100% | 375.0 MiB/s |  38.6 MiB |  00m00s
[232/260] Installing cmake-data-0:3.27. 100% | 124.8 MiB/s |   8.4 MiB |  00m00s
[233/260] Installing cmake-0:3.27.7-1.f 100% | 392.9 MiB/s |  31.4 MiB |  00m00s
[234/260] Installing cliquer-libs-0:1.2 100% |  70.8 MiB/s |  72.5 KiB |  00m00s
[235/260] Installing libnauty-0:2.8.8-1 100% | 531.2 MiB/s |   3.7 MiB |  00m00s
[236/260] Installing metis-0:5.1.0.3-3. 100% | 327.7 MiB/s |   1.0 MiB |  00m00s
[237/260] Installing MUMPS-0:5.6.2-3.fc 100% | 468.9 MiB/s |  10.3 MiB |  00m00s
[238/260] Installing coin-or-Cbc-0:2.10 100% | 344.6 MiB/s |   2.4 MiB |  00m00s
[239/260] Installing coin-or-Clp-0:1.17 100% | 359.1 MiB/s |   2.5 MiB |  00m00s
[240/260] Installing coin-or-Cgl-0:0.60 100% | 360.3 MiB/s |   1.1 MiB |  00m00s
[241/260] Installing coin-or-lemon-0:1. 100% | 232.7 MiB/s | 238.3 KiB |  00m00s
[242/260] Installing boost-test-0:1.83. 100% | 308.0 MiB/s | 630.9 KiB |  00m00s
[243/260] Installing boost-stacktrace-0 100% |  58.2 MiB/s |  59.6 KiB |  00m00s
[244/260] Installing boost-serializatio 100% | 217.6 MiB/s | 445.6 KiB |  00m00s
[245/260] Installing boost-random-0:1.8 100% |   0.0   B/s |  29.9 KiB |  00m00s
[246/260] Installing boost-program-opti 100% | 262.8 MiB/s | 269.1 KiB |  00m00s
[247/260] Installing boost-nowide-0:1.8 100% |   0.0   B/s |  25.1 KiB |  00m00s
[248/260] Installing boost-math-0:1.83. 100% | 321.2 MiB/s | 657.8 KiB |  00m00s
[249/260] Installing boost-iostreams-0: 100% |  88.8 MiB/s |  91.0 KiB |  00m00s
[250/260] Installing boost-contract-0:1 100% | 100.9 MiB/s | 103.4 KiB |  00m00s
[251/260] Installing boost-0:1.83.0-2.f 100% |  81.8 KiB/s |   1.7 KiB |  00m00s
[252/260] Installing boost-devel-0:1.83 100% | 285.8 MiB/s | 145.8 MiB |  00m01s
[253/260] Installing coin-or-lemon-deve 100% | 359.6 MiB/s |   2.5 MiB |  00m00s
[254/260] Installing python3-devel-0:3. 100% | 159.4 MiB/s |   1.3 MiB |  00m00s
[255/260] Installing python3-setuptools 100% | 258.8 MiB/s |   7.2 MiB |  00m00s
[256/260] Installing libstdc++-static-0 100% | 335.9 MiB/s |   5.7 MiB |  00m00s
[257/260] Installing qt-devel-1:4.8.7-7 100% | 263.6 MiB/s |  37.7 MiB |  00m00s
[258/260] Installing annobin-plugin-gcc 100% |  67.5 MiB/s | 967.3 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[259/260] Installing gcc-plugin-annobin 100% |   3.5 MiB/s |  57.4 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:280-1.fc40.noarch
[260/260] Installing llvm-devel-0:17.0. 100% |  67.5 MiB/s |  23.6 MiB |  00m00s
>>> Running post-install scriptlet: llvm-devel-0:17.0.6-2.fc40.i686
>>> Stop post-install scriptlet: llvm-devel-0:17.0.6-2.fc40.i686
>>> Running post-transaction scriptlet: fontconfig-0:2.15.0-1.fc40.i686
>>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-1.fc40.i686
>>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.i686
>>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-35.fc40.i686
>>> Running trigger-install scriptlet: info-0:7.1-1.fc40.i686
>>> Stop trigger-install scriptlet: info-0:7.1-1.fc40.i686
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc40.i686
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc40.i686
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc40.i686
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc40.i686
>>> Running trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.i686
>>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.i686
Warning: skipped PGP checks for 258 package(s).
Finish: build setup for seqan-1.4.2-53.fc40.src.rpm
Start: rpmbuild seqan-1.4.2-53.fc40.src.rpm
warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1706313600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.SgcHAh
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf seqan-1.4.2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seqan-src-1.4.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd seqan-1.4.2
+ rm -rf /builddir/build/BUILD/seqan-1.4.2-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/seqan-1.4.2-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (seqan-docpath.patch):'
Patch #0 (seqan-docpath.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0
patching file util/cmake/SeqAnBuildSystem.cmake
Patch #1 (seqan-exclude_splazers_fiona_tests.patch):
+ echo 'Patch #1 (seqan-exclude_splazers_fiona_tests.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0
patching file core/apps/splazers/CMakeLists.txt
patching file core/apps/fiona/CMakeLists.txt
+ find . -type f -name '*.h' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.cpp' -exec chmod 0644 '{}' ';'
+ cp -p extras/apps/rep_sep/LICENSE LGPLv3+.txt
+ cp -p core/apps/rabema/LICENSE GPLv3+.txt
+ cp -p LICENSE BSD.txt
+ cp -p extras/apps/seqan_flexbar/INFO extras/apps/seqan_flexbar/README
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.vmkTVu
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seqan-1.4.2
+ mkdir -p build/Release
+ pushd build/Release
~/build/BUILD/seqan-1.4.2/build/Release ~/build/BUILD/seqan-1.4.2
++ echo '-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection'
++ sed -e s/-O2/-O0/g
+ SEQAN_OPT_FLAGS='-O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection'
+ SEQAN_OPT_FLAGS='-O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC'
+ export 'CXXFLAGS=-std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon'
+ CXXFLAGS='-std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon'
+ export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -fPIC'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -fPIC'
+ cmake '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_APP_VERSION:STRING=1.4.2 -DZLIB_INCLUDE_DIR:PATH=/usr/include '-DZLIB_LIBRARY:FILEPATH=-L/usr/lib -lz' -DBZIP2_INCLUDE_DIR:PATH=/usr/include '-DBZIP2_LIBRARY:FILEPATH=-L/usr/lib -lbz2' -DLEMON_INCLUDE_DIR:PATH=/usr/include '-DLEMON_LIBRARY:FILEPATH=-L/usr/lib -lemon' -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE ../..
CMake Warning (dev) at CMakeLists.txt:9 (project):
  cmake_minimum_required() should be called prior to this top-level project()
  call.  Please see the cmake-commands(7) manual for usage documentation of
  both commands.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- The C compiler identification is GNU 14.0.1
-- The CXX compiler identification is GNU 14.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:16 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Initializing SeqAn Build System...
-- No revision system found.
--   Repository date not determined.
--   Repository revision not determined.
-- Configuring core
CMake Deprecation Warning at core/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Deprecation Warning at core/apps/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps
CMake Deprecation Warning at core/apps/dfi/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/dfi
-- Looking for include file execinfo.h
-- Looking for include file execinfo.h - found
--   Determined version is 1.4.2
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/dfi/CMakeLists.txt:70 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /usr/bin/python3 (found version "3.12.1") 
CMake Deprecation Warning at core/apps/fiona/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/fiona
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found Boost: /usr/lib/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0")  
CMake Deprecation Warning at core/apps/mason/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/mason
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/mason/CMakeLists.txt:76 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/micro_razers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/micro_razers
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/micro_razers/CMakeLists.txt:73 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/pair_align/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/pair_align
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/pair_align/CMakeLists.txt:63 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/rabema/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/rabema
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/rabema/CMakeLists.txt:101 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/razers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/razers
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/razers/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/razers2/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/razers2
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/razers2/CMakeLists.txt:82 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/sak/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/sak
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/sak/CMakeLists.txt:78 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/sam2matrix/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/sam2matrix
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/sam2matrix/CMakeLists.txt:66 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/samcat/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/samcat
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/samcat/CMakeLists.txt:66 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/seqan_tcoffee/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/seqan_tcoffee
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/seqan_tcoffee/CMakeLists.txt:65 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/seqcons/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/seqcons
CMake Deprecation Warning at core/apps/snp_store/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/snp_store
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/snp_store/CMakeLists.txt:86 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/splazers/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/splazers
CMake Deprecation Warning at core/apps/stellar/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/stellar
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/stellar/CMakeLists.txt:71 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at core/apps/tree_recon/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring core/apps/tree_recon
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  core/apps/tree_recon/CMakeLists.txt:65 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring extras
CMake Deprecation Warning at extras/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Deprecation Warning at extras/apps/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps
CMake Deprecation Warning at extras/apps/alf/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/alf
CMake Deprecation Warning at extras/apps/breakpoint_calculator/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/breakpoint_calculator
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/breakpoint_calculator/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/bs_tools/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/bs_tools
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/bs_tools/CMakeLists.txt:109 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/fx_tools/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/fx_tools
CMake Deprecation Warning at extras/apps/gustaf/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/gustaf
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/gustaf/CMakeLists.txt:68 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/insegt/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/insegt
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/insegt/CMakeLists.txt:80 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/mason2/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/mason2
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/mason2/CMakeLists.txt:155 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/ngs_roi/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring sandbox/jagla/apps/ngs_roi
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/ngs_roi/CMakeLists.txt:101 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/param_chooser/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/param_chooser
CMake Deprecation Warning at extras/apps/razers3/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/razers3
-- Performing Test CXX11_FOUND
-- Performing Test CXX11_FOUND - Success
-- Looking for BZ2_bzCompressInit in -L/usr/lib -lbz2
-- Looking for BZ2_bzCompressInit in -L/usr/lib -lbz2 - found
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/razers3/CMakeLists.txt:108 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/razers3/CMakeLists.txt:112 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/rep_sep/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/rep_sep
CMake Deprecation Warning at extras/apps/searchjoin/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/searchjoin
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/searchjoin/CMakeLists.txt:69 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/seqan_flexbar/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/seqan_flexbar
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/seqan_flexbar/CMakeLists.txt:92 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/sgip/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/sgip
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/sgip/CMakeLists.txt:81 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at extras/apps/variant_comp/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring extras/apps/variant_comp
CMake Warning (dev) at util/cmake/SeqAnBuildSystem.cmake:223 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  extras/apps/variant_comp/CMakeLists.txt:65 (seqan_add_app_test)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Configuring docs
CMake Deprecation Warning at docs/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring manual
CMake Deprecation Warning at manual/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
--   Sphinx not found, not building sphinx manual as a test.
-- Configuring sandbox
CMake Deprecation Warning at sandbox/CMakeLists.txt:9 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Configuring util/py_lib
CMake Warning (dev) at util/py_lib/CMakeLists.txt:12 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

This warning is for project developers.  Use -Wno-dev to suppress it.

--   Python nosetests ('import nose' failed), cannot add tests for seqan.dox
-- Could NOT find Java (missing: Java_JAVA_EXECUTABLE Java_JAR_EXECUTABLE Java_JAVAC_EXECUTABLE Java_JAVAH_EXECUTABLE Java_JAVADOC_EXECUTABLE) 
-- jar binary not found, disabling CTD support.
-- Configuring done (2.2s)
-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_SKIP_INSTALL_RPATH
    SEQAN_APP_VERSION
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/seqan-1.4.2/build/Release
+ make -j1 all
/usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  0%] Built target seqan_core
make  -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  0%] Building CXX object core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o -MF CMakeFiles/dfi.dir/dfi.cpp.o.d -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:274:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  274 | struct LessSubstringEnd : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:298:27: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  298 | struct LessRange : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:315:25: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  315 | struct LessLex : public binary_function<TSubstringEntry, TSubstringEntry, bool >
      |                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = unsigned int; TEndPos = unsigned int; TSize = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1871 |                         TSize size = _sortWotdBucket(
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<unsigned char>, Owner<> >, IndexWotd<Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = ParentLinks<Preorder>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1977 |                         while (goDown(it)) ;
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   537 |         goBegin(it);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   847 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = unsigned int; TEndPos = unsigned int; TSize = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = unsigned int; TEndPos = unsigned int; TSize = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinFreq, PredMaxFreq>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = unsigned int; TEndPos = unsigned int; TSize = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<unsigned char>, Owner<> >, IndexWotd<Dfi<PredMinSupp, PredEmerging> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   854 |                                 case 0: return runDFI<PredMinSupp, PredEmerging, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = unsigned int; TEndPos = unsigned int; TSize = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinSupp, PredEmerging> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   855 |                                 case 1: return runDFI<PredMinSupp, PredEmerging, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = unsigned int; TEndPos = unsigned int; TSize = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinSupp, PredEmerging>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinSupp, PredEmerging> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |                                 case 2: return runDFI<PredMinSupp, PredEmerging, Dna> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = unsigned int; TEndPos = unsigned int; TSize = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<unsigned char>, Owner<> >, IndexWotd<Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   861 |                                 case 0: return runDFI<PredMinAllSupp, PredEntropy, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = unsigned int; TEndPos = unsigned int; TSize = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   862 |                                 case 1: return runDFI<PredMinAllSupp, PredEntropy, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = unsigned int; TEndPos = unsigned int; TSize = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32:   required from ‘typename seqan::Size<seqan::Index<TObject, seqan::IndexWotd<TSpec> > >::Type seqan::_wotdEvaluate(const Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = TopDown<ParentLinks<Preorder> >; typename Size<Index<TObject, IndexWotd<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1871 |                         TSize size = _sortWotdBucket(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~~~~^
    1872 |                                 index,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~               
    1873 |                                 value(it).range.i1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~  
    1874 |                                 w1 & index.BITMASK1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~ 
    1875 |                                 repLength(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~       
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34:   required from ‘bool seqan::_goDown(Iter<Index<TObject, IndexWotd<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, THideEmptyEdges>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = Dfi<PredMinAllSupp, PredEntropy>; TSpec = ParentLinks<Preorder>; TDfsOrder = Preorder_; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   800 |                 TSize childNode = _wotdEvaluate(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                   ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >, IndexWotd<Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = ParentLinks<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17:   required from ‘void seqan::goBegin(Iter<Index<TObject, TSpec>, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1977 |                         while (goDown(it)) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |         goBegin(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   863 |                                 case 2: return runDFI<PredMinAllSupp, PredEntropy, Dna> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   847 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   847 |                                 case 0: return runDFI<PredMinFreq, PredMaxFreq, unsigned char> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinFreq, PredMaxFreq> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinFreq, PredMaxFreq>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinFreq, PredMaxFreq> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   854 |                                 case 0: return runDFI<PredMinSupp, PredEmerging, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   854 |                                 case 0: return runDFI<PredMinSupp, PredEmerging, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   855 |                                 case 1: return runDFI<PredMinSupp, PredEmerging, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   855 |                                 case 1: return runDFI<PredMinSupp, PredEmerging, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |                                 case 2: return runDFI<PredMinSupp, PredEmerging, Dna> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinSupp, PredEmerging> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinSupp, PredEmerging>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinSupp, PredEmerging> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |                                 case 2: return runDFI<PredMinSupp, PredEmerging, Dna> (getArgumentValues(parser, 0), options.minSupp, options.growthRate, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   861 |                                 case 0: return runDFI<PredMinAllSupp, PredEntropy, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<unsigned char>; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<unsigned char>, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<unsigned char>, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<unsigned char>, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   861 |                                 case 0: return runDFI<PredMinAllSupp, PredEntropy, unsigned char> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   862 |                                 case 1: return runDFI<PredMinAllSupp, PredEntropy, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   862 |                                 case 1: return runDFI<PredMinAllSupp, PredEntropy, AminoAcid> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘typename seqan::Size<seqan::Index<seqan::StringSet<TString, TSpec>, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > > >::Type seqan::_sortFirstWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size<Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > > >::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2021 |                         size = _sortFirstWotdBucket(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   863 |                                 case 2: return runDFI<PredMinAllSupp, PredEntropy, Dna> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  302 |                                 *(saBeg + (*(boundBeg + ord))++) = localPos;
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of ‘TSize seqan::_sortWotdBucket(Index<StringSet<TString, TSpec>, IndexWotd<Dfi<TPredHull, TPred> > >&, TBeginPos, TEndPos, TSize) [with TText = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = unsigned int; TSize = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26:   required from ‘void seqan::_wotdCreateFirstLevel(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2024 |                         size = _sortWotdBucket(index, 0, length(indexSA(index)), 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24:   required from ‘bool seqan::indexCreate(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, WotdDir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag<FibreDir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   615 |                 _wotdCreateFirstLevel(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = IndexWotd<Dfi<PredMinAllSupp, PredEntropy> >; TFibre = FibreDir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TObject, IndexWotd<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Owner<> >; TSpec = Dfi<PredMinAllSupp, PredEntropy>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   363 |                 indexRequire(index, WotdDir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd<seqan::Dfi<PredMinAllSupp, PredEntropy> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = double; TParamPred = double; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   536 |         TIter it(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   863 |                                 case 2: return runDFI<PredMinAllSupp, PredEntropy, Dna> (getArgumentValues(parser, 0), options.minSupp, options.entropy, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  448 |                                         *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA;
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  451 |                                                 *(saBeg + index.sentinelBound++) = *itSA;
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   257 |                         assignSeq(seqs[ds[s] + i], multiFasta[i], format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   504 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   848 |                                 case 1: return runDFI<PredMinFreq, PredMaxFreq, AminoAcid> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13:   required from ‘bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   257 |                         assignSeq(seqs[ds[s] + i], multiFasta[i], format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19:   required from ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   504 |         if (!loadDatasets(mySet, fileNames, ds)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |                                 case 2: return runDFI<PredMinFreq, PredMaxFreq, Dna> (getArgumentValues(parser, 0), options.minFreq, options.maxFreq, options.maximal, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:845:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  845 |                         switch (options.alphabet)
      |                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:851:17: note: here
  851 |                 case 1:
      |                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:852:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  852 |                         switch (options.alphabet)
      |                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:858:17: note: here
  858 |                 case 2:
      |                 ^~~~
[  1%] Linking CXX executable ../../../bin/dfi
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../../bin/dfi  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  1%] Built target dfi
make  -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  2%] Building CXX object core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o -MF CMakeFiles/compute_gain.dir/compute_gain.cpp.o.d -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:2:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:10:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23:   required from ‘void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Stats*; TSource1 = Stats*; TSource2 = Stats*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   605 |         valueConstruct(target_begin, getValue(source_begin));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Stats; TValueTarget = Stats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1420 |     _arrayConstructCopyDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Stats; TValueTarget = Stats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<Stats>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = Stats; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<Stats>; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:843:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   843 |     resize(stats, options.numThreads);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&)’ is deprecated [-Wdeprecated-copy]
   97 | struct Stats
      |        ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&)’ is deprecated [-Wdeprecated-copy]
   97 | struct Stats
      |        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘Stats::Stats(const Stats&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TValue = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20:   required from ‘typename seqan::EnableIf<typename seqan::Or<typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFasta_> >::Type, typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFastq_> >::Type>::Type, int>::Type seqan::read2(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, RecordReader<TFile, SinglePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TIdSpec = Owner<>; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSeqSpec = Owner<>; TFile = std::basic_fstream<char>; TSpec = void; TTag = Tag<TagFasta_>; typename EnableIf<typename Or<typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFasta_> >::Type, typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFastq_> >::Type>::Type, int>::Type = int; typename Or<typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFasta_> >::Type, typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFastq_> >::Type>::Type = True; typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFasta_> >::Type = True; typename RemoveConst_<TTag>::Type = Tag<TagFasta_>; typename IsSameType<typename RemoveConst_<TTag>::Type, Tag<TagFastq_> >::Type = False]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1032 |         appendValue(sequences, seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:809:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   809 |     if (read2(ids, seqs, readerGenome, Fasta()) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[  3%] Linking CXX executable ../../../bin/compute_gain
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../../bin/compute_gain  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  3%] Built target compute_gain
make  -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Building CXX object core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o -MF CMakeFiles/fiona.dir/fiona.cpp.o.d -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1687 | struct LessOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1705 | struct LessPositionOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4212 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4215 |         Dna5String tmp;
      |         ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4235 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4238 |         double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4413 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4416 |         if (options.errorrate != 0 && options.wovsum != 0)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4461 |     if (options.verbosity >= 1)
      |     ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 4463 |         SEQAN_PROTIMESTART(search);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 4684 |     for (unsigned i = 0; i < length(store.readSeqStore); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 4689 |         TFionaQgramIndex qgramIndex(prefixes);
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4852 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4854 |         if (inTerm && options.verbosity >= 2)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5027 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5032 |         resize(store.readSeqStore, readCount);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5479 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5483 |         bool autoCycles = (options.cycles == 0 || options.cycles == 1000);
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5486 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 5489 |         SEQAN_PROTIMESTART(correction);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5495 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5497 |         if (!loadReadsNoNames(store, options.inputFilename, options))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5561 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5563 |         options.autolevel = (options.fromLevel <= 1);
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5671 |     if (res != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5674 |         if (options.verbosity >= 1 && options.cycles > 1)
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag<TTagSpec>) [with TSA = String<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<10> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = unsigned int; TParallelTag = Parallel_]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  4761 |         _qgramFillSuffixArray(indexSA(qgramIndex), indexText(qgramIndex), indexShape(qgramIndex), indexDir(qgramIndex), qgramIndex.bucketMap, getStepSize(qgramIndex), True(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |                     sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  445 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  472 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSize = unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16:   required from ‘typename seqan::Suffix<T>::Type seqan::suffix(StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TPosition = Pair<unsigned int, short unsigned int, Tag<Pack_> >; typename Suffix<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   754 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4918 |                 std::cerr << prefix(suffix(store.readSeqStore, front(indexSA(myIndex))), QGRAM_LENGTH) << " - ";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<unsigned int>& seqan::VertexEsa<unsigned int>::operator=(const seqan::VertexEsa<unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10:   required from ‘void seqan::goNextImpl(Iter<TIndex, VSTree<TopDown<ParentLinks<TSpec> > > >&, VSTreeIteratorTraits<Preorder_, THideEmptyEdges>) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2774 |                                 clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&, TTraits) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >; TTraits = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2052 |                 goNextImpl(it, traits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2047 |                 goNext(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree<TSpec> > >::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3526 |             goNext(iter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   842 |             resize(kmer, length(shape), (TValue)x);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  350 |         *_cur = *src;
      |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[  4%] Linking CXX executable ../../../bin/fiona
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../../bin/fiona  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Built target fiona
make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  5%] Building CXX object core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DFIONA_ILLUMINA -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o -MF CMakeFiles/fiona_illumina.dir/fiona.cpp.o.d -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1687 | struct LessOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1705 | struct LessPositionOverlap : public std::binary_function<TCorrection, TCorrection, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4212 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4215 |         Dna5String tmp;
      |         ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4235 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4238 |         double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4413 |     if (options.verbosity >= 2)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4416 |         if (options.errorrate != 0 && options.wovsum != 0)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4461 |     if (options.verbosity >= 1)
      |     ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 4463 |         SEQAN_PROTIMESTART(search);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 4684 |     for (unsigned i = 0; i < length(store.readSeqStore); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 4689 |         TFionaQgramIndex qgramIndex(prefixes);
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4852 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4854 |         if (inTerm && options.verbosity >= 2)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5027 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5032 |         resize(store.readSeqStore, readCount);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5479 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5483 |         bool autoCycles = (options.cycles == 0 || options.cycles == 1000);
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5486 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   81 |     #define SEQAN_PROTIMESTART(a)       _proFloat a = sysTime()
      |                                         ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro ‘SEQAN_PROTIMESTART’
 5489 |         SEQAN_PROTIMESTART(correction);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5495 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5497 |         if (!loadReadsNoNames(store, options.inputFilename, options))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5561 |     if (options.verbosity >= 1)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5563 |         options.autolevel = (options.fromLevel <= 1);
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 5671 |     if (res != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 5674 |         if (options.verbosity >= 1 && options.cycles > 1)
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag<TTagSpec>) [with TSA = String<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<10> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = unsigned int; TParallelTag = Parallel_]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  4761 |         _qgramFillSuffixArray(indexSA(qgramIndex), indexText(qgramIndex), indexShape(qgramIndex), indexDir(qgramIndex), qgramIndex.bucketMap, getStepSize(qgramIndex), True(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |                     sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  445 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  472 |                         sa[atomicPostInc(*bktPtr, parallelTag)] = localPos;
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSize = unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16:   required from ‘typename seqan::Suffix<T>::Type seqan::suffix(StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TPosition = Pair<unsigned int, short unsigned int, Tag<Pack_> >; typename Suffix<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   754 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4918 |                 std::cerr << prefix(suffix(store.readSeqStore, front(indexSA(myIndex))), QGRAM_LENGTH) << " - ";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<unsigned int>& seqan::VertexEsa<unsigned int>::operator=(const seqan::VertexEsa<unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4686 |             appendValue(prefixes, infix(store.readSeqStore[i], 0, length(store.readSeqStore[i]) - cutLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10:   required from ‘void seqan::goNextImpl(Iter<TIndex, VSTree<TopDown<ParentLinks<TSpec> > > >&, VSTreeIteratorTraits<Preorder_, THideEmptyEdges>) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2774 |                                 clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&, TTraits) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >; TTraits = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2052 |                 goNextImpl(it, traits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9:   required from ‘void seqan::goNext(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<ParentLinks<Preorder> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2047 |                 goNext(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree<TSpec> > >::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3526 |             goNext(iter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>*; TParam = seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>*; TParam = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagLimit_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>; TExpand = TagLimit_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>, Array<4> >; TValue = Segment<const Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32:   required from ‘void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String<TEmission>&, seqan::String<TCargo>&, FionaOptions&, seqan::Tag<TUsage>, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<seqan::Preorder> > > >; TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  3625 |                     appendValue(correctCandidates, getOccurrences(iterSibling));
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  4944 |         traverseAndSearchCorrections<-1>(myConstrainedIterator, store, correctionList, firstCorrectionForRead, options, alg, maxReadLength, resources);
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::Range<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = long unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   842 |             resize(kmer, length(shape), (TValue)x);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  350 |         *_cur = *src;
      |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from ‘unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1958 |                 erase(store.readSeqStore[readId], possibleCorrections[correction].errorPos, possibleCorrections[correction].errorPos + possibleCorrections[correction].indelLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5019 |         totalCorrections = applyReadErrorCorrections(correctionList,firstCorrectionForRead,store,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = Range<Pair<unsigned int, short unsigned int, Tag<Pack_> >*>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from ‘void seqan::assign(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   349 |     for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                        ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from ‘void seqan::operator<<(Range<TIterator>&, Pipe<TInput, TPipeSpec>&) [with TIterator = Pair<unsigned int, short unsigned int, Tag<Pack_> >*; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TPipeSpec = Multi<Skew7, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   359 |     assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, short unsigned int, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, short unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = short unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> >; TIndexSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   422 |                         TBase(_index) {}
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                     ^
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from ‘unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  4925 |                 TConstrainedIterator myConstrainedIterator(myIndex);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                      ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  5592 |                 numCorrected = correctReads(store, options, FionaPoisson());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Owner<> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, short unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[  6%] Linking CXX executable ../../../bin/fiona_illumina
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../../bin/fiona_illumina  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make  -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  7%] Building CXX object core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o -MF CMakeFiles/mason.dir/mason.cpp.o.d -o CMakeFiles/mason.dir/mason.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TDifference = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TPosition = int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >; TPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   628 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TScore = Score<int, Tag<LevenshteinDistance_> >; TShrinkMatches = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2582 |                                                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1565:36:   required from ‘int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1565 |     convertMatchesToGlobalAlignment(fragmentStore, Score<int, EditDistance>(), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   608 |     ret = simulateReadsMain(fragmentStore, rng, options, modelParameters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19:   required from ‘typename seqan::Size<T>::Type seqan::reserve(T&, const TSize&) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = unsigned int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2091 |     return reserve(me, new_capacity, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:478:12:   required from ‘int writeRandomSequence(TRNG&, size_t, const seqan::CharString&, const TOptions&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TOptions = Options<seqan::Tag<IlluminaReads_> >; size_t = unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   478 |     reserve(randomSequence, length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:568:38:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   568 |         int ret = writeRandomSequence(rng, options.randomSourceLength, referenceFilename, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1385:31:   required from ‘int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1385 |                 String<Dna5Q> read = infix(haplotypeContigsCopy[inst.contigId], inst.beginPos, inst.endPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   608 |     ret = simulateReadsMain(fragmentStore, rng, options, modelParameters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   700 |         write(fstrm, fragmentStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<char, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<char, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11:   required from ‘void seqan::insert(String<TValue_, Journaled<THostSpec_, TJournalSpec_, TBufferSpec_> >&, TPos, const TString&) [with TValue = SimpleType<unsigned char, Dna5_>; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String<char, Alloc<> >; TPos = long long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   745 |     append(journaledString._insertionBuffer, seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   944 |             insert(haplotype[contigId], pos + delta, alt[allele]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19:   required from ‘typename seqan::Size<T>::Type seqan::reserve(T&, const TSize&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2091 |     return reserve(me, new_capacity, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1008:12:   required from ‘void buildHaplotype(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Journaled<seqan::Alloc<> > > >&, seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, seqan::String<seqan::String<Snp> >&, TRNG&, const Options<void>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1008 |     reserve(buffer, options.haplotypeIndelRangeMax);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1322:27:   required from ‘int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1322 |             buildHaplotype(haplotypeContigs, fragmentStore, snpSet, rng, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from ‘int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   608 |     ret = simulateReadsMain(fragmentStore, rng, options, modelParameters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   116 |         return simulateReads(options, referenceFilename, IlluminaReads());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<char, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<char, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11:   required from ‘void seqan::insert(String<TValue_, Journaled<THostSpec_, TJournalSpec_, TBufferSpec_> >&, TPos, const TString&) [with TValue = SimpleType<unsigned char, Dna5_>; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String<char, Alloc<> >; TPos = long long int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   745 |     append(journaledString._insertionBuffer, seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   944 |             insert(haplotype[contigId], pos + delta, alt[allele]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[  7%] Linking CXX executable ../../../bin/mason
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason.dir/mason.cpp.o -o ../../../bin/mason  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  7%] Built target mason
make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o -MF CMakeFiles/micro_razers.dir/micro_razers.cpp.o.d -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:25:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:662:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  662 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:691:49: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  691 |         struct LessRNoEdistHLen : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:747:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  747 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:779:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  779 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:30,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:38:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1911 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1922 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, const TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobalHamming) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobalHamming = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1378:35: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1378 |                 return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA());
      |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:   initializing argument 2 of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, const RazerSOptions<TSpec>&, MicroRNA) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = RazerSSpec<>]’
 1276 |         Segment<TGenome, InfixSegment> inf,             // potential match genome region
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  1911 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1922 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1911 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, True(), prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TValue = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25:   required from ‘void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1922 |                         _qgramFillSuffixArray(sa, text, shape, dir, nothing, False(),prefixLen, MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2007 |                 createQGramIndex(swiftIndex,options.rnaSeedLength,MicroRNA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1845 |                                 if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;               // if bucket is enabled
      |                                                          ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1847 |                                 sa[dir[hash(shape, itText) + 1]++] = localPos;                  // first hash
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1855 |                                         if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos;       // if bucket is enabled
      |                                                                  ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1857 |                                         sa[dir[hashNext(shape, itText) + 1]++] = localPos;      // next hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1490 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:570:9:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   570 |         reserve(reads.concat, length(reads.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   158 |     if (!loadReads(readSet, readNames, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1490 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1491:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1491 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2306:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2306 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1716 |         while (find(swiftFinder, swiftPattern, 0.2))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2309:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2309 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1474:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1474 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1492:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1492 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:612:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   612 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   562 |                 appendValue(reads, seq, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   158 |     if (!loadReads(readSet, readNames, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1497:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1497 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   182 |     int error = mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   562 |                 appendValue(reads, seq, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from ‘int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   158 |     if (!loadReads(readSet, readNames, toCString(readFileNames[0]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   537 |     int result = mapMicroRNAReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   456 |             if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   456 |             if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   456 |             if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -MF CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o.d -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp
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/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../../bin/micro_razers  -lrt 
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 10%] Building CXX object core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o -MF CMakeFiles/pair_align.dir/pair_align.cpp.o.d -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from ‘void seqan::write(TFile&, const Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, void, const Tag<WithoutEdgeId_> >; TNames = StringSet<String<char, Alloc<> > >; FastaFormat = const Tag<FastaFormat_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   897 |         if (convertAlignment(g, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   131 |         write(strmWrite, gAlign, sequenceNames, FastaFormat());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from ‘void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   215 |             pairwise_align<TAlphabet, AlignConfig<true, true, true, true> >(sc, seqfile, method, low, high, banded, options.outputFormat, outfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:262:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:   262 |         _initAlignParams<Dna5>(options, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from ‘void seqan::write(TFile&, const Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, void, const Tag<WithoutEdgeId_> >; TNames = StringSet<String<char, Alloc<> > >; FastaFormat = const Tag<FastaFormat_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   897 |         if (convertAlignment(g, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         write(strmWrite, gAlign, sequenceNames, FastaFormat());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from ‘void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   215 |             pairwise_align<TAlphabet, AlignConfig<true, true, true, true> >(sc, seqfile, method, low, high, banded, options.outputFormat, outfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:298:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   298 |         _initAlignParams<Rna5>(options, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from ‘void seqan::write(TFile&, const Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, void, const Tag<WithoutEdgeId_> >; TNames = StringSet<String<char, Alloc<> > >; FastaFormat = const Tag<FastaFormat_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   897 |         if (convertAlignment(g, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from ‘void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         write(strmWrite, gAlign, sequenceNames, FastaFormat());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from ‘void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   215 |             pairwise_align<TAlphabet, AlignConfig<true, true, true, true> >(sc, seqfile, method, low, high, banded, options.outputFormat, outfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:316:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   316 |         _initAlignParams<AminoAcid>(options, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[ 11%] Linking CXX executable ../../../bin/pair_align
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../../bin/pair_align  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Built target pair_align
make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:27:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:120:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   120 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:80:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    80 |     Dna5String seqFirstRC = seqFirst;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 13%] Linking CXX executable ../../../bin/rabema_prepare_sam
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../../bin/rabema_prepare_sam  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 13%] Built target rabema_prepare_sam
make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Building CXX object core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:31:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  105 |     std::binary_function<WeightedMatch, WeightedMatch, bool>
      |          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    88 | class ModifiedIterator
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<WeightedMatch>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<WeightedMatch>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   254 |             TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::end(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   507 |     typename Iterator<ModifiedString<THost, ModReverse>, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                            ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                        ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41:   required from ‘void buildErrorCurvePoints(seqan::String<WeightedMatch>&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TReadSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   411 |         Pattern<TReadSeq, TPatternSpec> pattern(read, -(int)length(read) * 40);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   901 |             buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     902 |                                   readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1252 |             res = matchesToErrorFunction(errorCurves, readAlignmentDistances, samReader, bamIOContext, readNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1253 |                                          refNameStore, faiIndex, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  624 |         return ModifiedString<THost, ModReverse>(host);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |         return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41:   required from ‘void buildErrorCurvePoints(seqan::String<WeightedMatch>&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TReadSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   411 |         Pattern<TReadSeq, TPatternSpec> pattern(read, -(int)length(read) * 40);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   901 |             buildErrorCurvePoints(errorCurves[readId], maxError, contig, record.rID, !hasFlagRC(record),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     902 |                                   readSeq, readId, endPos, readNameStore, options.matchN, TPatternSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1252 |             res = matchesToErrorFunction(errorCurves, readAlignmentDistances, samReader, bamIOContext, readNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1253 |                                          refNameStore, faiIndex, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:869:29:   required from ‘int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   869 |             if (readSequence(contig, faiIndex, faiRefId) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1252 |             res = matchesToErrorFunction(errorCurves, readAlignmentDistances, samReader, bamIOContext, readNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1253 |                                          refNameStore, faiIndex, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 14%] Linking CXX executable ../../../bin/rabema_build_gold_standard
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../../bin/rabema_build_gold_standard  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Built target rabema_build_gold_standard
make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 15%] Building CXX object core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, String<TAlphabet>&) [with TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1886 |         findIntervals(it.g,it.pm,query,result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:635:22:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::String<GsiRecord>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   635 |         findIntervals(intervalTrees[seqId], lastPos, queryResult);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, seqan::RecordReader<TStream, TPass>&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TGsiStream = seqan::Stream<seqan::Tag<seqan::GZFile_> >; TGsiStreamSpec = seqan::SinglePass<void>; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TFormat = seqan::Tag<seqan::Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   976 |             int res = benchmarkReadResult(result, currentSamRecords, bamIOContext, currentGsiRecords, refNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     977 |                                           refNameStoreCache, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     978 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1402 |             res = compareAlignedReadsToReference(result, samReader, bamIOContext, refNameStore, refNameStoreCache,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1403 |                                                  refSeqs, gsiReader, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1827 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1838 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1859 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long long unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = long long unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1311:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1311 |         reserve(refSeqs[i], sequenceLength(faiIndex, i), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::String<GsiRecord>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   611 |                 Pattern<Dna5String, TPatternSpec> pattern(readSeq, -static_cast<int>(length(readSeq)) * 1000);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                   ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, seqan::RecordReader<TStream, TPass>&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TGsiStream = seqan::Stream<seqan::Tag<seqan::GZFile_> >; TGsiStreamSpec = seqan::SinglePass<void>; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TFormat = seqan::Tag<seqan::Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   976 |             int res = benchmarkReadResult(result, currentSamRecords, bamIOContext, currentGsiRecords, refNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     977 |                                           refNameStoreCache, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     978 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1402 |             res = compareAlignedReadsToReference(result, samReader, bamIOContext, refNameStore, refNameStoreCache,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1403 |                                                  refSeqs, gsiReader, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  624 |         return ModifiedString<THost, ModReverse>(host);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |         return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51:   required from ‘int benchmarkReadResult(RabemaStats&, const seqan::String<seqan::BamAlignmentRecord>&, const seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::String<GsiRecord>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   611 |                 Pattern<Dna5String, TPatternSpec> pattern(readSeq, -static_cast<int>(length(readSeq)) * 1000);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                   ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42:   required from ‘int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >&, seqan::RecordReader<TStream, TPass>&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TGsiStream = seqan::Stream<seqan::Tag<seqan::GZFile_> >; TGsiStreamSpec = seqan::SinglePass<void>; TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TFormat = seqan::Tag<seqan::Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   976 |             int res = benchmarkReadResult(result, currentSamRecords, bamIOContext, currentGsiRecords, refNameStore,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     977 |                                           refNameStoreCache, refSeqs, refIdMapping, options, tagPattern,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     978 |                                           /*pairedEnd=*/ false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                           ~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1402 |             res = compareAlignedReadsToReference(result, samReader, bamIOContext, refNameStore, refNameStoreCache,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1403 |                                                  refSeqs, gsiReader, options, MyersUkkonenReads(), Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 15%] Linking CXX executable ../../../bin/rabema_evaluate
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../../bin/rabema_evaluate  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 15%] Built target rabema_evaluate
make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:3:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:13:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  105 |     std::binary_function<WeightedMatch, WeightedMatch, bool>
      |          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    88 | class ModifiedIterator
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |       ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<WeightedMatch>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<WeightedMatch>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   254 |             TModifiedString rRightInterval(infix(errorCurve, rightmostPos, offset + intervalLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<WeightedMatch>, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<WeightedMatch>, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::end(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<WeightedMatch>, InfixSegment>; TTagSpec = Standard_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<WeightedMatch>, InfixSegment>, AdaptorIterator<WeightedMatch*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   507 |     typename Iterator<ModifiedString<THost, ModReverse>, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                            ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   257 |             for (TModifiedStringIterator it = begin(rRightInterval, Standard()); it != end(rRightInterval, Standard()); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                        ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<WeightedMatch>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<WeightedMatch>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:23:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    23 |     Dna5String contig = argv[1];
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                               ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    27 |     Pattern<Dna5String, MyersUkkonenReads> pattern(read, -static_cast<int>(length(read)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                                                         ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  624 |         return ModifiedString<THost, ModReverse>(host);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9:   required from ‘seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> > seqan::reverseString(THost&) [with THost = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |         return ModifiedString<THost, ModReverse>(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55:   required from ‘static void seqan::FindBeginImpl_<seqan::Myers<seqan::FindPrefix, THasState, void> >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix> >; TNeedle = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |                 setHost(pattern.data_findBeginPattern, reverseString(needle_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62:   required from ‘void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Myers<FindInfix> >; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   336 |         return FindBeginImpl_<TFindBeginPatternSpec>::_findBeginInit(pattern, needle_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16:   required from ‘void seqan::_patternFirstInit(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   591 |         _findBeginInit(pattern, needle);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19:   required from ‘void seqan::setHost(Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, const TNeedle2&) [with TNeedle = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers<FindPrefix, True, void>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   723 |         _patternFirstInit(pattern, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10:   required from ‘seqan::Pattern<TNeedle, seqan::Myers<TSpec, THasState, TFindBeginPatternSpec> >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers<seqan::FindPrefix, seqan::True, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   497 |                 setHost(*this, ndl);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9:   required from ‘seqan::Pattern<TNeedle, seqan::Tag<seqan::MyersUkkonenReads_> >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TNeedle = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   108 |         _wrappedPattern(infix(ndl, 0, length(ndl) - 1), score),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:    27 |     Pattern<Dna5String, MyersUkkonenReads> pattern(read, -static_cast<int>(length(read)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                                         ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 17%] Linking CXX executable ../../../bin/rabema_do_search
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../../bin/rabema_do_search  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 17%] Built target rabema_do_search
make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:715:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  715 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:747:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  747 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:779:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  779 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:30,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:55:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:237:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  237 |         struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp: In function ‘seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:548:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  548 |     else if (endsWith(tmp, ".gff"))
      |          ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:551:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  551 |         if (isSet(parser, "shape"))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:585:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  585 |     if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  587 |         if ((options.minClippedLen < 0) && (stop = true))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1490 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1736:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1736 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1490 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   410 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:211:9:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |         reserve(reads.concat, length(reads.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   178 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   410 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1490 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1491:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1491 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2306 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2306 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2309 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1718 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2309 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   391 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   391 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   391 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1685 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1712 |     indexRequire(host(swiftPattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2068 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2233 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1474:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1474 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1492:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1492 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31:   required from ‘static void seqan::AssignString_<TExpand>::assign_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1128 |             arrayConstructCopy(begin(source, Standard()), begin(source, Standard()) + part_length, begin(target, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1176 |     AssignString_<Tag<TExpand> >::assign_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1108 |     assign(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >& seqan::String<TValue, seqan::Alloc<TSpec> >::operator=(const TSource&) [with TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   173 |         assign(*this, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:918:13:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   918 |                                                         gInf = infix(genomes[(*it).gseqNo], (*it).gBegin, (*it).gEnd);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:241:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   241 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   199 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   178 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1497:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1497 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   508 |                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~~~~~~~~~^
     509 |                                 (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     510 |                                 rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     511 |                                 options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2303 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   199 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   178 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   679 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2295 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   444 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2298 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   679 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   410 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2230 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2292 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   699 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   679 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[ 18%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp
[ 19%] Linking CXX executable ../../../bin/razers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../../bin/razers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Built target razers
make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o -MF CMakeFiles/razers2.dir/razers.cpp.o.d -o CMakeFiles/razers2.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:488:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  488 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:535:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:583:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  583 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:630:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  630 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:127:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  127 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:169:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  169 |                 public ::std::binary_function < typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:228:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  228 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function ‘seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:492:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  492 |     if (!isSet(parser, "read-naming") && options.outputFormat == 4)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:495:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  495 |         if (isSet(parser, "shape"))
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:529:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  529 |     if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  532 |         options.errorRate = (100.0 - options.errorRate) / 100.0;
      |         ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:  1097 |                         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |                         matchVerify(verifier, infix(swiftFinder), verifier.m.readId, readSet, TSwiftSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |                         matchVerify(verifier, infix(swiftFinder), verifier.m.readId, readSet, TSwiftSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |                         matchVerify(verifier, infix(swiftFinder), verifier.m.readId, readSet, TSwiftSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1000 |         TGenomeInfix origInf(inf);
      |                      ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1068 |                                 TGenomeInfixRev         infRev(inf);
      |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1128 |                 TGenomeInfixRev         infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1097 |                         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   972 |         TSeqIter seqItEnd = end(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1097 |                         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   460 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSource = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_dequeue.h:344:8:   required from ‘void seqan::pushBack(Dequeue<TValue, TSpec>&, const TValue&) [with TValue = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   344 |         assign(*me.data_back, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   510 |                                         pushBack(fifo, fL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Triple<long long int, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>& seqan::Triple<long long int, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>::operator=(const seqan::Triple<long long int, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long long int, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long long int; T2 = seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>; T3 = seqan::AlignQualityStoreElement<signed char, void>; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:201:9:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         reserve(store.readSeqStore.concat, length(store.readSeqStore.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   167 |                 if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   460 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1049:21:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1049 |                                 TReadPrefixRev          readRev(prefix(readSet[readId], ndlLength));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1068 |                                 TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1518 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1521 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TDifference = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TPosition = int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >; TPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   628 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TScore = Score<int, Tag<Simple_> >; TShrinkMatches = False]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2582 |                                                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1053:48:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1053 |                 convertMatchesToGlobalAlignment(store, scoreType, False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   434 |         TReadSet        &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                          ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1190 |         TReadSet                &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                                 ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   434 |         TReadSet        &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                          ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1190 |         TReadSet                &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                 ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   434 |         TReadSet        &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                          ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1190 |         TReadSet                &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                 ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1015:13:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1015 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1069:22:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1069 |                                 TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_ofstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9:   required from ‘void seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, CharString, CharString, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1092 |                         write(file, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 dumpMatches(store, genomeFileNames, gnoToFileMap, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:481:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   481 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1073:16:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier<FragmentStore<>, RazerSOptions<>, String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > > >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1073 |                                 while (find(myersFinderRev, myersPatternRev, /*score*/maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   542 |                                                 if (matchVerify(verifierL, infix(genome, (TSignedGPos)(*it).i2.beginPos, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     543 |                                                                 matePairId, readSetL, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1515 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   194 |                 appendMatePair(store, seq[0], seq[1], id[0], id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   167 |                 if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   617 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |                 appendMatePair(store, seq[0], seq[1], id[0], id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   167 |                 if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1507 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   477 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<22, 10> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13:   required from ‘void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1199 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19:   required from ‘int seqan::mapSingleReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1321 |                                 mapSingleReads(store, genome, gseqNo, swiftPattern, forwardPatterns, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1459 |                 return mapSingleReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1510 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<22, 10> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   617 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23:   required from ‘void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TSource1 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TSource2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   605 |         valueConstruct(target_begin, getValue(source_begin));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValueTarget = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1420 |     _arrayConstructCopyDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValueTarget = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:1435:18:   required from ‘typename seqan::Size<seqan::StringSet<TString, TSpec> >::Type seqan::resize(StringSet<TString, TSpec>&, TSize, Tag<TUsage>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TSize = unsigned int; TExpand = TagExact_; typename Size<StringSet<TString, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1435 |     return resize(me.strings, new_size, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:731:8:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   731 |         resize(readSetL, pairCount, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   153 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   460 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   617 |                         if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSource = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>; TSource = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource1 = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource2 = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource1 = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>*; TSource2 = Triple<long long int, AlignedReadStoreElement<int, GapAnchor<int>, void>, AlignQualityStoreElement<signed char, void>, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14:   required from ‘void seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, TGenome&, unsigned int, Pattern<TReadIndex, Swift<TSwiftSpec> >&, Pattern<TReadIndex, Swift<TSwiftSpec> >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TPreprocessing = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   510 |                                         pushBack(fifo, fL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21:   required from ‘int seqan::mapMatePairReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   831 |                                 mapMatePairReads(store, genome, contigId, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1456 |                 return mapMatePairReads(store, genomeFileNameList, gnoToFileMap, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19:   required from ‘int seqan::mapReads(FragmentStore<TSpec, TConfig>&, StringSet<String<char, Alloc<> > >&, String<TSequenceValue>&, RazerSOptions<TSpec>&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TGNoToFile = Pair<String<char, Alloc<> >, unsigned int>; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1504 |                         return mapReads(store, genomeFileNameList, gnoToFileMap, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   201 |         int error = mapReads(store, genomeFileNames, gnoToFileMap, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Triple<long long int, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>& seqan::Triple<long long int, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>::operator=(const seqan::Triple<long long int, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<long long int, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, seqan::AlignQualityStoreElement<signed char, void>, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = long long int; T2 = seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>; T3 = seqan::AlignQualityStoreElement<signed char, void>; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 20%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o -MF CMakeFiles/razers2.dir/param_tabs.cpp.o.d -o CMakeFiles/razers2.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/param_tabs.cpp
[ 21%] Linking CXX executable ../../../bin/razers2
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers2.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers2.dir/razers.cpp.o CMakeFiles/razers2.dir/param_tabs.cpp.o -o ../../../bin/razers2  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 21%] Built target razers2
make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Building CXX object core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                                                ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   361 |         typename Iterator<TSeqString const>::Type it_end = end(seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                            ~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   361 |         typename Iterator<TSeqString const>::Type it_end = end(seq);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                            ~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   501 |                     if (writeRecord(*outPtr, id, infix(seqCopy, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     502 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     503 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74:   required from ‘int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream<char>; TIdString = String<char, Alloc<> >; TQualString = Segment<String<char, Alloc<> >, InfixSegment>; TSeqString = Segment<String<char, Alloc<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   379 |         for (typename Iterator<TSeqString const, Rooted>::Type it = begin(seq, Rooted()); !atEnd(it); ++it)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                     ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   523 |                     if (writeRecord(*outPtr, id, infix(seq, infixBegin, infixEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     524 |                                     infix(quals, infixBegin, infixEnd), seqan::Fastq(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     525 |                                     options.seqOutOptions) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:492:45:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   492 |                 seqan::Dna5String seqCopy = seq;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 23%] Linking CXX executable ../../../bin/sak
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../../bin/sak  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 23%] Built target sak
make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Building CXX object core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   501 |                 res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38:   required from ‘int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   697 |         res = seqIO._impl->readRecord(id, seq, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:155:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   155 |         if (readRecord(id, seq, seqStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 24%] Linking CXX executable ../../../bin/sam2matrix
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../../bin/sam2matrix  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Built target sam2matrix
make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Building CXX object core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 26%] Linking CXX executable ../../../bin/samcat
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../../bin/samcat  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 26%] Built target samcat
make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Building CXX object core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:25:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervalsExcludeTouching(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, Pair<unsigned int, unsigned int, BitPacked<31, 1> > > > >; TValue = unsigned int; TCargo = Pair<unsigned int, unsigned int, BitPacked<31, 1> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34:   required from ‘void seqan::matchRefinement(TAlignmentString&, StringSet<TSequence, TSpec>&, TScore&, TOutGraph&, typename Size<typename Value<TIterator>::Type>::Type, TAnnotation&, Tag<TExpand>) [with TAlignmentString = String<Fragment<> >; TAnnotation = bool; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Dependent<Tag<TagInsist_> >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size<typename Value<TIterator>::Type>::Type = unsigned int; typename Value<TIterator>::Type = Fragment<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   576 |                                         findIntervalsExcludeTouching(gs[seq_i_pos],pms[seq_i_pos],node_i,relevant_segments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17:   required from ‘void seqan::matchRefinement(TFragmentString&, StringSet<TSequence, TSpec>&, TOutGraph&) [with TFragmentString = String<Fragment<> >; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Dependent<Tag<TagInsist_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   700 |         matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:229:17:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, Graph<Alignment<TStringSet, TCargo, TSpec2> >&, FrequencyCounting) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = unsigned int; TSpec = Tag<Default_>; FrequencyCounting = const Tag<FrequencyCounting_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   229 |         matchRefinement(matches,strSet,outGraph);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:115:21:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Dna5_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   115 |         buildAlignmentGraph(matches, g, FrequencyCounting() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   282 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2068 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2079 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2100 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = unsigned int; TSpec = Tag<Default_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Dna5_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   145 |         if (convertAlignment(g, mat)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   282 |         _initMsaParams<Dna5>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = unsigned int; TSpec = Tag<Default_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, Rna5_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         if (convertAlignment(g, mat)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:302:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   302 |         _initMsaParams<Rna5>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from ‘bool seqan::convertAlignment(const Graph<Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TCargo = unsigned int; TSpec = Tag<Default_>; TMatrix = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1892 |                 TStringSetStr str = label(g,it->second);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from ‘void seqan::evaluateAlignment(const MsaOptions<TAlphabet, TScore>&) [with TAlphabet = SimpleType<unsigned char, AminoAcid_>; TScore = Score<int, ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         if (convertAlignment(g, mat)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from ‘void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   258 |         evaluateAlignment(msaOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:322:34:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   322 |         _initMsaParams<AminoAcid>(parser, sc);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 27%] Linking CXX executable ../../../bin/seqan_tcoffee
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../../bin/seqan_tcoffee  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Built target seqan_tcoffee
make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 28%] Building CXX object core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o -MF CMakeFiles/seqcons.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function ‘seqan::ArgumentParser::ParseResult parseCommandLine(seqan::ConsensusOptions&, int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:94:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   94 |     if (res != seqan::ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:98:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   98 |         getOptionValue(consOpt.readsfile, parser, "reads");
      |         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:240:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  240 |     if (res != seqan::ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  244 |         typedef FragmentStore<> TFragmentStore;
      |         ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   972 |         TSeqIter seqItEnd = end(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervalsExcludeTouching(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, Pair<unsigned int, unsigned int, BitPacked<31, 1> > > > >; TValue = unsigned int; TCargo = Pair<unsigned int, unsigned int, BitPacked<31, 1> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34:   required from ‘void seqan::matchRefinement(TAlignmentString&, StringSet<TSequence, TSpec>&, TScore&, TOutGraph&, typename Size<typename Value<TIterator>::Type>::Type, TAnnotation&, Tag<TExpand>) [with TAlignmentString = String<Fragment<> >; TAnnotation = bool; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >, unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Dependent<Tag<TagInsist_> >; TScore = unsigned int; TTagSpec = TagExactRefinement_; typename Size<typename Value<TIterator>::Type>::Type = unsigned int; typename Value<TIterator>::Type = Fragment<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   576 |                                         findIntervalsExcludeTouching(gs[seq_i_pos],pms[seq_i_pos],node_i,relevant_segments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17:   required from ‘void seqan::matchRefinement(TFragmentString&, StringSet<TSequence, TSpec>&, TOutGraph&) [with TFragmentString = String<Fragment<> >; TOutGraph = Graph<Alignment<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >, unsigned int, Tag<Default_> > >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Dependent<Tag<TagInsist_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   700 |         matchRefinement(matches,strSet,fake_score,ali_graph,1,anno,ExactRefinement());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:182:17:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, String<TValue2, TSpec2>&, Graph<Alignment<TStringSet, TCargo, TSpec> >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = unsigned int; TSpec = Tag<Default_>; FractionalScore = const Tag<FractionalScore_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   182 |         matchRefinement(matches,strSet,outGraph);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:311:21:   required from ‘void seqan::buildAlignmentGraph(String<TValue, TSpec>&, String<TValue2, TSpec2>&, Graph<Alignment<TStringSet, TCargo, TSpec> >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = unsigned int; TSpec = Tag<Default_>; TScore = Score<int, Tag<Simple_> >; ReScore = const Tag<ReScore_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   311 |         buildAlignmentGraph(matches, scores, outGraph, FractionalScore() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:564:21:   required from ‘void seqan::consensusAlignment(Graph<Alignment<TStringSet, TCargo, TSpec> >&, String<Pair<TSize, TSize> >&, const TConfigOptions&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Dependent<Tag<TagInsist_> > >; TCargo = void; TSpec = const Tag<WithoutEdgeId_>; TSize = unsigned int; TConfigOptions = ConsensusOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   564 |         buildAlignmentGraph(matches, scores, g, consOpt.sc, ReScore() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:278:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   278 |                                 consensusAlignment(gOut, begEndPos, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2068 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2079 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >&)’ is deprecated [-Wdeprecated-copy]
 2100 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > > >’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<31, 1> > >]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   207 |                 write(strmWrite, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TDifference = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TPosition = int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2801 |                                                                 insertGaps(gaps, insPos - rBegin, blkLen);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   184 |                 read(strmReads, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_realign.h:776:15:   required from ‘void seqan::reAlign(FragmentStore<TSpec, TConfig>&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TScore = Score<int, WeightedConsensusScore<Score<int, const Tag<FractionalScore_> >, Score<int, const Tag<ConsensusScore_> > > >; TId = unsigned int; TMethod = int; TBandwidth = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   776 |                         appendValue(contigEl.seq, (TAlphabet)value(itConsensus), Generous() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:263:12:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   263 |                                 reAlign(fragStore, combinedScore, currentContig, consOpt.rmethod, consOpt.bandwidth, consOpt.include);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19:   required from ‘void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String<char, Alloc<> >; TGaps1 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGaps2 = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |             op = (*it1 == *it2)? 'M': 'R';
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                   ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16:   required from ‘void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String<char, Alloc<> >; TMDString = String<char, Alloc<> >; TContig = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>; TReadSeq = String<SimpleType<unsigned char, Dna5Q_> >; TErrors = int; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |     getMDString(md, contigGaps, readGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; TAlignFunctor = Nothing; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1058 |             alignAndGetCigarString(cigar, md, store.contigStore[(*it).contigId], readSeq, *it, errors, alignFunctor);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1210 |         _writeAlignments(target, store, Sam(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25:   required from ‘void seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1239 |         _writeAlignments(target, store, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8:   required from ‘int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   220 |                 write(strmWrite, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   308 |     ret = writeOutput(fragStore, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14:   required from ‘int seqan::_convertSimpleReadFile(TFile&, FragmentStore<TSpec, TConfig>&, TFilePath&, bool) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TFilePath = const std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1545 |                         appendRead(fragStore, seq, fragId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   166 |                 if (_convertSimpleReadFile(strmReads, fragStore, consOpt.readsfile, moveToFront) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>*; TParam = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>; TSource = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2738 |                 TContigGapsPW           contigGapsPW(/*contigInfix, */gaps[(*it).id]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   184 |                 read(strmReads, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2739 |                 TReadGaps                       readGaps(store.readSeqStore[(*it).readId], (*it).gaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   184 |                 read(strmReads, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14:   required from ‘int seqan::_convertSimpleReadFile(TFile&, FragmentStore<TSpec, TConfig>&, TFilePath&, bool) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; TFilePath = const std::__cxx11::basic_string<char>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1545 |                         appendRead(fragStore, seq, fragId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29:   required from ‘int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   166 |                 if (_convertSimpleReadFile(strmReads, fragStore, consOpt.readsfile, moveToFront) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   250 |     int ret = loadFiles(fragStore, numberOfContigs, consOpt);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  564 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
  565 |             case 'D':
      |             ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 29%] Linking CXX executable ../../../bin/seqcons
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqcons.dir/seqcons.cpp.o -o ../../../bin/seqcons  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target seqcons
make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Building CXX object core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:32:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:53:
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:356:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  356 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:405:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  405 |     struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool >
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:420:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  420 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:468:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  468 |     struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:481:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  481 |     struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:504:40: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  504 |     struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                        ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:523:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  523 |     struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:545:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  545 |     struct HigherQ : public ::std::binary_function < TQual, TQual, bool >
      |                                    ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h: In instantiation of ‘seqan::Pair<T1, T2, TSpec>::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:5235:46:   required from ‘void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  5235 |                                              Pair<unsigned,TReadInf>(1,rInf)));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:997:74:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   997 |                     if(!options.realign) dumpShortIndelPolymorphismsBatch(fragmentStore, readCigars, fragmentStore.contigStore[0].seq, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, indelFileStream, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1442 |     int result = detectSNPs(options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h:143:53: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  143 |     Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {}
      |                                                     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TDifference = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4144:36:   required from ‘void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TReadCigars = StringSet<String<Pair<char, int> > >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  4144 |         TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41:   required from ‘void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2564 |                 dumpVariantsRealignBatch(fragStoreGroup,readCigars,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
    2565 |                     readCounts,genomeID,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~ 
    2566 |                     groupStartCoord,groupStartPos,groupEndPos,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2567 |                     fileSNPs,fileIndels,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1012 |                         dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TDifference = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1200:28:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TExpand> >::Type seqan::iter(const T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator<const T, const Tag<TExpand> >::Type = Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1200 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1178:16:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(const T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1178 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:450:22:   required from ‘bool seqan::isGap(const Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   450 |     return isGap(iter(gaps, clippedViewPos));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4505:72:   required from ‘void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TReadCigars = StringSet<String<Pair<char, int> > >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  4505 |                 ((indelConsens[candidateViewPos].i1 & 7) == 6  && isGap(referenceGaps, candidateViewPos-refStart)))  // position in consensus is the same as in reference
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41:   required from ‘void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2564 |                 dumpVariantsRealignBatch(fragStoreGroup,readCigars,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
    2565 |                     readCounts,genomeID,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~ 
    2566 |                     groupStartCoord,groupStartPos,groupEndPos,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2567 |                     fileSNPs,fileIndels,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1012 |                         dumpVariantsRealignBatchWrap(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,indelFileStream,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/tokenize.h:943:12:   required from ‘int seqan::readNChars(TBuffer&, RecordReader<TStream, TPass>&, unsigned int) [with TBuffer = String<SimpleType<unsigned char, Dna5Q_> >; TStream = std::basic_fstream<char>; TPass = SinglePass<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   943 |     reserve(buffer, n, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1004:39:   required from ‘int seqan::readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, String<Pair<int> >&, StringSet<TSequence>&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&, bool) [with TFile = std::basic_fstream<char>*; TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCounts = String<unsigned int, Alloc<> >; TCigarStr = String<Pair<char, int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TGenomeIdMap = std::map<String<char, Alloc<> >, unsigned int>; TContigPos = int; TSize = unsigned int; TValue = int; TOptions = SNPCallingOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1004 |                         if (readNChars(curr_read, reader, 1) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:903:54:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   903 |                     result = readMatchesFromGFF_Batch(readFileStreams[j], fragmentStore, readCounts, readClips,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     904 |                                               readCigars, genomes[i], gIdStringToIdNumMap,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     905 |                                               i, currentWindowBegin, currentWindowEnd, highestChrId[j], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4809:28:   required from ‘void seqan::dumpSNPsBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore<SnpStoreSpec_>; TReadCigars = StringSet<String<Pair<char, int> > >; TReadCounts = String<unsigned int, Alloc<> >; TGenomeName = String<char, Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  4809 |                 Dna5String gInf = infix(genome, currentBegin, currentEnd);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1014:38:   required from ‘int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |                         dumpSNPsBatch(fragmentStore, readCigars, readCounts, genomeNames[i], startCoord, currentWindowBegin, currentWindowEnd, snpFileStream,options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1442 |     int result = detectSNPs(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 30%] Linking CXX executable ../../../bin/snp_store
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../../bin/snp_store  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Built target snp_store
make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 31%] Building CXX object core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:712:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  712 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:740:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  740 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:766:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  766 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:784:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:806:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:126:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  126 |         struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if (skipWhitespaces(reader) != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |         int kickout = 0;
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:373:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  373 |     if (pm_options.verbose)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  376 |         resize(avg,pm_options.totalN,(TFloat)0.0);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (value(reader) == 'e')
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  938 |         bool atLeastOneFound = false;
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:59:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:525:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:564:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  564 |     for (unsigned i = 0; i < length(readFileNames); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:567:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  567 |         if(length(readFileNames) == 2)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:615:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  615 |     if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  617 |         if ((options.minClippedLen < 0) && (stop = true))
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:   584 |         return TRevComp(host);
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  161 |             _host(std::forward<THost_>(host))
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  165 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:62:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  684 |         TGenomeInfix oriInf = inf;
      |                      ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  692 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestPrefix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2618:20:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2618 |                                 if (matchVerify( (*it).i2,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                     ~~~~~~~~~~~^~~~~~~~~~~
    2619 |                                                 infix(genome, (*it).i2.gBegin, maxEndPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2620 |                                                 rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~
    2621 |                                                 readSet, //readSetL
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~~~~
    2622 |                                                 forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~~
    2623 |                                                 options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~
    2624 |                                                 TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~
    2625 |                                                 LongestPrefix()) &&
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                 ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  684 |         TGenomeInfix oriInf = inf;
      |                      ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  692 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1466 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2036:19:   required from ‘int seqan::mapSingleReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2036 |                                 mapSingleReads(matches, genome, gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2183:24:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2183 |                 return mapSingleReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1466 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   166 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&; THost = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; typename seqan::RemoveReference<THost_>::Type = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   161 |             _host(std::forward<THost_>(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9:   required from ‘typename seqan::ReverseComplementString<const THost>::Type seqan::reverseComplementString(const THost&) [with THost = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename ReverseComplementString<const THost>::Type = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   584 |         return TRevComp(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2446 |         TSwiftFinderL swiftFinderL(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   683 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:516:9:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   516 |         reserve(reads.concat, length(reads.concat), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   204 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2446 |         TSwiftFinderL swiftFinderL(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   692 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<const seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(const Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<const Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:537:26:   required from ‘void seqan::setHost(ModifiedString<THost, TSpec>&, const THost&) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |     me._host = _toPointer(host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:696:10:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   696 |                 setHost(readRev,infix(readSet[rseqNo],length(readSet[rseqNo])-options.minMatchLen,length(readSet[rseqNo])));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:477:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  477 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3101:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3101 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3103:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3103 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   683 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1875 |         pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                                                    ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1466 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2256:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2256 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2259:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2259 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7:   required from ‘void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   111 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17:   required from ‘void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   219 |         _streamWriteSeq(target, source, typename IsSequence<TSource const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14:   required from ‘void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TString = char [1]; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   282 |         _streamWrite(file, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7:   required from ‘void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   343 |         write(file, data, "", Raw());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = std::basic_ofstream<char>; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   807 |     write(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(const Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<const TObject>::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; typename Parameter_<typename Haystack<const TObject>::Type>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Haystack<const TObject>::Type = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1171 |         return container(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(const Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1628 |     __int64 textEnd = length(haystack(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1639 |     return positionRange(const_cast<Finder<THaystack, Swift<TSpec> > const &>(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2516 |                                 gPair = positionRange(swiftFinderL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  801 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(const Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<const TObject>::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; typename Parameter_<typename Haystack<const TObject>::Type>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Haystack<const TObject>::Type = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1171 |         return container(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(const Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<void> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1628 |     __int64 textEnd = length(haystack(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25:   required from ‘seqan::Pair<typename seqan::Position<seqan::Finder<THaystack, seqan::Swift<TSpec> > >::Type> seqan::positionRange(Finder<THaystack, Swift<TSpec> >&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Tag<SwiftSemiGlobal_<void> >; typename Position<Finder<THaystack, Swift<TSpec> > >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1639 |     return positionRange(const_cast<Finder<THaystack, Swift<TSpec> > const &>(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2516 |                                 gPair = positionRange(swiftFinderL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  801 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1823 |     finder.haystackEnd = begin(tmpHost) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1881 |         if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2410:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2410 |         TReadSetL &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2411 |         TReadSetR &readSetR = host(host(swiftPatternR));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2411 |         TReadSetR &readSetR = host(host(swiftPatternR));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:670:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   670 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:693:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   693 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:1735:14:   required from ‘bool seqan::combineLeftRight(TMatch&, TMatch&, TRead&, TGenome&, RazerSOptions<TSpec>&, char, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TRead = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1735 |                 appendValue(strL,genomeInfL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2728 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   664 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   664 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   664 |         TReadSet &readSetL = host(host(swiftPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                   ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1450:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1450 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1468:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1468 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31:   required from ‘static void seqan::AssignString_<TExpand>::assign_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1128 |             arrayConstructCopy(begin(source, Standard()), begin(source, Standard()) + part_length, begin(target, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1176 |     AssignString_<Tag<TExpand> >::assign_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11:   required from ‘void seqan::assign(String<TValue, TSpec>&, const TSource&) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1108 |     assign(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >& seqan::String<TValue, seqan::Alloc<TSpec> >::operator=(const TSource&) [with TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   173 |         assign(*this, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1102:13:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1102 |                                                         gInf = infix(genomes[(*it).gseqNo], (*it).gBegin, (*it).gEnd);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   508 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   204 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:704:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   704 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2570 |                                 if (!matchVerify(mR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~~~~~^~~~
    2571 |                                         infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2572 |                                         rseqNo,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~  
    2573 |                                         readSet,//readSetR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~
    2574 |                                         forwardPatternsR,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~
    2575 |                                         options,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~ 
    2576 |                                         TSwiftSpec(),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~
    2577 |                                         LongestSuffix()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1792 |     hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1912 |             if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1473:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1473 |         while (find(myersFinderRev, myersPatternRev, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   775 |                                         if (matchVerify(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~^
     776 |                                                         (*it).i2, infix(genome, (*it).i2.gBegin, (*it).i2.gEnd),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     777 |                                                         rseqNo, readSetL, forwardPatternsL,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     778 |                                                         options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                         ~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2253 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   670 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   452 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:185:61:   required from ‘void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   185 |         typename Iterator<TSource const, Standard>::Type it = begin(source, Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                               ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17:   required from ‘void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   219 |         _streamWriteSeq(target, source, typename IsSequence<TSource const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14:   required from ‘void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TString = char [1]; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   282 |         _streamWrite(file, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7:   required from ‘void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   343 |         write(file, data, "", Raw());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = std::basic_ofstream<char>; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   807 |     write(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:626:22:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::begin(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   626 |     TResult tmp(begin(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:497:103:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::end(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   497 |     typename Iterator<ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(begin(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                                  ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:186:63:   required from ‘void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   186 |         typename Iterator<TSource const, Standard>::Type it_end = end(source, Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17:   required from ‘void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream<char>; TSource = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   219 |         _streamWriteSeq(target, source, typename IsSequence<TSource const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14:   required from ‘void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >; TString = char [1]; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   282 |         _streamWrite(file, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7:   required from ‘void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream<char>; TData = ModifiedString<ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   343 |         write(file, data, "", Raw());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10:   required from ‘TStream& seqan::operator<<(TStream&, const ModifiedString<THost, TSpec>&) [with TStream = std::basic_ofstream<char>; THost = ModifiedString<const Segment<const String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5Q_> > > >; TSpec = Tag<ModReverse_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   807 |     write(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14:   required from ‘void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeNames = StringSet<String<char, Alloc<> > >; TReads = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >; TReadNames = StringSet<String<char, Alloc<> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1589 |                                     file << reverseComplementString(reads[currReadNo]) << "\t*\t";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   305 |                 dumpMatches(matches, genomeNames, genomeFileNames, gnoToFileMap, readSet, readRegions, stats, readNames, readFileNames[0], errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14:   required from ‘bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TNameSet = StringSet<String<char, Alloc<> > >; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   508 |                 appendValue(reads, seq[0], Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   204 |                 if (!loadReads(readSet, readNames, toCString(readFileNames[0]), toCString(readFileNames[1]), options)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2728 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   702 |                                 if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3066 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3068 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, onegappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2481 |         while (find(swiftFinderR, swiftPatternR, maxErrorRateR))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  3070 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, gappedR, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2245 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   717 |         while (find(swiftFinderR, swiftPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2248 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   702 |                                 if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   required from ‘seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::Holder(const THostValue&) [with TValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |         assignValue(*this, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16:   required from ‘void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<String<SimpleType<unsigned char, Dna5Q_> >, Myers<FindInfix, True, void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   683 |         TSwiftFinderR swiftFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21:   required from ‘int seqan::mapMatePairReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1046 |                                 mapMatePairReads(matches, genome, gseqNo, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2180 |                 return mapMatePairReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2242 |                         return mapReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   702 |                                 if (!chooseParams(options,pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, TraceBack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from ‘void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern<TReadIndexL, Swift<TSwiftSpec> >&, Pattern<TReadIndexR, Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TOriReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIndexL = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TReadIndexR = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2728 |                                           !combineLeftRight(mRtmp,mLtmp,read,genome,options,orientation,TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TReadSet_ = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShapeL = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TShapeR = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2263 |                                 mapSplicedReads(matches, genome, gseqNo, readSet, readRegions, swiftPatternL, swiftPatternR, forwardPatternsL, forwardPatternsR, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from ‘int seqan::mapSplicedReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3099 |                                 return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options, ungappedL, ungappedR, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from ‘int seqan::mapReads(TMatches&, StringSet<String<char, Alloc<> > >&, StringSet<String<char, Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TReadRegions = String<Pair<unsigned int, Pair<unsigned int, int, BitPacked<2, 32> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2227 |         return mapSplicedReads(matches, genomeFileNameList, genomeNames, gnoToFileMap, readSet, readRegions, cnts, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         int error = mapReads(matches, genomeFileNames, genomeNames, gnoToFileMap, readSet, readRegions, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   736 |         int result = mapReads(genomeFileNames, readFileNames, errorPrbFileName, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 31%] Linking CXX executable ../../../bin/splazers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../../bin/splazers  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 31%] Built target splazers
make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Building CXX object core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:30:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:154:32: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 | struct LessPos : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:206:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 | struct LessLength : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:125:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  125 |     public::std::unary_function<AminoAcid, AminoAcid>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:   718 |         mainWithOptions(options, String<Dna>());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBestLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    58 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      59 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      60 |                 databaseID, databaseStrand, matches, BestLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobalExtend_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    66 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      67 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      68 |                 databaseID, databaseStrand, matches, BandedGlobalExtend());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna_>; TValueTarget = SimpleType<unsigned char, Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna_>; TValueTarget = SimpleType<unsigned char, Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Rna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Rna5_>; TValueTarget = SimpleType<unsigned char, Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Rna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Rna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Rna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, AminoAcid_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, AminoAcid_>; TValueTarget = SimpleType<unsigned char, AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, AminoAcid_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::AminoAcid_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, AminoAcid_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, AminoAcid_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   159 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<char, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<char, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<char, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<char, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   475 |         integrateAlign(align, bandedAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Rna_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Rna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<char, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<char, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<char, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<char, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<unsigned int>; TSequence = seqan::String<char, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TAlign = seqan::Align<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<char, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<char, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<char, Alloc<> >, InfixSegment>; TString2 = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<char, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<unsigned int>; TSequence = seqan::String<char, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Rna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, AminoAcid_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<char, Alloc<> >, InfixSegment>*; TParam = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<char, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<char, Alloc<> >, InfixSegment>; TString2 = Segment<String<char, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<char, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<char, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   461 |     TConstSeqVIterator seqVBegin = begin(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                    ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   462 |     TConstSeqVIterator seqVEnd = end(seqV, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   720 |         mainWithOptions(options, String<Dna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   722 |         mainWithOptions(options, String<Rna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Rna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, Rna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, Rna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   724 |         mainWithOptions(options, String<Rna5>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::AminoAcid_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType<unsigned char, AminoAcid_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<SimpleType<unsigned char, AminoAcid_>, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         mainWithOptions(options, String<AminoAcid>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TLimitsString>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TLimitsString>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment<Segment<String<char, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, BandedGlobal) [with TInfix = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; BandedGlobal = const seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   466 |         globalAlignment(bandedAlign, scoreMatrix, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<char, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyBandedGlobal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<char, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    62 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      63 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      64 |                 databaseID, databaseStrand, matches, BandedGlobal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<char, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   728 |         mainWithOptions(options, String<char>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, TraceBack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<unsigned int, unsigned int, int, void>; TSource = Triple<unsigned int, unsigned int, int, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<unsigned int, unsigned int, int, void>; TSource = Triple<unsigned int, unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<unsigned int, unsigned int, int, void>*; TSource1 = Triple<unsigned int, unsigned int, int, void>*; TSource2 = Triple<unsigned int, unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<unsigned int, unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<unsigned int, unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<unsigned int, unsigned int, int, void>*; TSource1 = Triple<unsigned int, unsigned int, int, void>*; TSource2 = Triple<unsigned int, unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from ‘bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    54 |         stellar(swiftFinder, swiftPattern, options.epsilon, options.minLength, options.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      55 |                 options.disableThresh, options.compactThresh, options.numMatches, options.verbose,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      56 |                 databaseID, databaseStrand, matches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from ‘bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   172 |             if (!_stellarOnOne(databases[i], databaseIDs[i], swiftPattern, true, matches, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from ‘int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   688 |     if (!_stellarOnAll(databases, databaseIDs, queries, queryIDs, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   718 |         mainWithOptions(options, String<Dna>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, unsigned int, int, void>& seqan::Triple<unsigned int, unsigned int, int, void>::operator=(const seqan::Triple<unsigned int, unsigned int, int, void>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<unsigned int, unsigned int, int, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = unsigned int; T2 = unsigned int; T3 = int; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
[ 33%] Linking CXX executable ../../../bin/stellar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../../bin/stellar  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Built target stellar
make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Building CXX object core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:18:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:139:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  139 |     if (res != seqan::ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:143:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  143 |         typedef double TDistanceValue;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:165:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  165 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:169:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  169 |         String<TName> names;
      |         ^~~~~~
[ 34%] Linking CXX executable ../../../bin/tree_recon
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../../bin/tree_recon  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 34%] Built target tree_recon
make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 34%] Built target seqan_extras
make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 34%] Building CXX object extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o -MF CMakeFiles/alf.dir/alf.cpp.o.d -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11:   required from ‘seqan::String<TValue, TSpec>& seqan::operator+=(String<TValue, TSpec>&, const TRight&) [with TLeftValue = SimpleType<unsigned char, Dna5_>; TLeftSpec = Alloc<>; TRight = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1980 |     append(left, right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1292 |                 sequenceCut += infix(sequence, position(itSeq), i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                                  ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = unsigned int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_base.h:1051:9:   required from ‘void seqan::unhash(TString&, THash, unsigned int) [with TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; THash = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1051 |                 resize(result, q);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:60:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    60 |         unhash(w, i, k);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:181:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   181 |             appendValue(mySequenceSet, sequenceTmp, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexQGram<UngappedShape<0> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15:   required from ‘void seqan::MarkovModel<TAlphabet, TFloat, TSpec>::build(const seqan::StringSet<seqan::String<TString> >&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TFloat = double; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   303 |                 indexRequire(ind, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10:   required from ‘void seqan::buildMarkovModel(MarkovModel<TAlphabet, TFloat, TSpec>&, StringSet<String<TString> >&) [with TAlphabet = SimpleType<unsigned char, Dna_>; TFloat = double; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   866 |         mm.build(stringSet);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21:   required from ‘void seqan::countKmers(String<unsigned int, Alloc<> >&, MarkovModel<TAlphabetBG, TValue>&, const TString&, unsigned int) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TAlphabetBG = SimpleType<unsigned char, Dna_>; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   395 |     buildMarkovModel(backgroundModel, seqSetMM);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const AFScore<const Tag<D2z_> >&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   135 |             countKmers(*itKmerCounts, *itMM, *itSeqSet, score.kmerSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<D2z_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   195 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreD2z);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexQGram<UngappedShape<0> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexQGram<UngappedShape<0> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15:   required from ‘void seqan::MarkovModel<TAlphabet, TFloat, TSpec>::build(const seqan::StringSet<seqan::String<TString> >&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TFloat = double; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   303 |                 indexRequire(ind, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10:   required from ‘void seqan::buildMarkovModel(MarkovModel<TAlphabet, TFloat, TSpec>&, StringSet<String<TString> >&) [with TAlphabet = SimpleType<unsigned char, Dna_>; TFloat = double; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   866 |         mm.build(stringSet);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21:   required from ‘void seqan::countKmers(String<unsigned int, Alloc<> >&, MarkovModel<TAlphabetBG, TValue>&, const TString&, unsigned int) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TAlphabetBG = SimpleType<unsigned char, Dna_>; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   395 |     buildMarkovModel(backgroundModel, seqSetMM);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const AFScore<const Tag<D2z_> >&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   135 |             countKmers(*itKmerCounts, *itMM, *itSeqSet, score.kmerSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<D2z_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   195 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreD2z);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11:   required from ‘seqan::String<TValue, TSpec>& seqan::operator+=(String<TValue, TSpec>&, const TRight&) [with TLeftValue = SimpleType<unsigned char, Dna5_>; TLeftSpec = Alloc<>; TRight = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1980 |     append(left, right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1292 |                 sequenceCut += infix(sequence, position(itSeq), i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                  ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15:   required from ‘void seqan::calculateCovariance(TValue&, const String<TAlphabet, TSpec>&, const String<TAlphabet, TSpec>&, MarkovModel<TAlphabet, TValue>&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   850 |         append(clump, word2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48:   required from ‘void seqan::_standardiseCounts(TString&, const String<unsigned int, Alloc<> >&, const StringSet<String<unsigned int, Alloc<> > >&, const TSequence&, const AFScore<const Tag<N2_> >&) [with TString = String<double>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   549 |                             calculateCovariance(value(covarianceMatrix, wordColHash, wordRowHash), wMM1, wMM2, backgroundModel, (len1 + score.kmerSize - 1));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TValue, 2>&, const TStringSet&, const AFScore<const Tag<N2_> >&) [with TValue = double; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   179 |         _standardiseCounts(*itStandardisedKmerCounts, revComIndex, kmerNeighbourhood, *itSeqSet, score);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<N2_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   205 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna_>*; TSource1 = SimpleType<unsigned char, Dna_>*; TSource2 = SimpleType<unsigned char, Dna_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15:   required from ‘void seqan::calculateCovariance(TValue&, const String<TAlphabet, TSpec>&, const String<TAlphabet, TSpec>&, MarkovModel<TAlphabet, TValue>&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   850 |         append(clump, word2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48:   required from ‘void seqan::_standardiseCounts(TString&, const String<unsigned int, Alloc<> >&, const StringSet<String<unsigned int, Alloc<> > >&, const TSequence&, const AFScore<const Tag<N2_> >&) [with TString = String<double>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   549 |                             calculateCovariance(value(covarianceMatrix, wordColHash, wordRowHash), wMM1, wMM2, backgroundModel, (len1 + score.kmerSize - 1));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27:   required from ‘void seqan::_alignmentFreeComparison(Matrix<TValue, 2>&, const TStringSet&, const AFScore<const Tag<N2_> >&) [with TValue = double; TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   179 |         _standardiseCounts(*itStandardisedKmerCounts, revComIndex, kmerNeighbourhood, *itSeqSet, score);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from ‘void seqan::alignmentFreeComparison(Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = double; TComparisonMethod = AFScore<const Tag<N2_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   151 |     _alignmentFreeComparison(scoreMatrix, sequenceSet, comparisonMethod);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   205 |         alignmentFreeComparison(myMatrix, mySequenceSet, myScoreN2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[ 35%] Linking CXX executable ../../../bin/alf
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../../bin/alf  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Built target alf
make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 36%] Building CXX object extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -MF CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o.d -o CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/parse_alignment.h:27,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.h:34,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:25:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
[ 37%] Linking CXX executable ../../../bin/breakpoint_calculator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/cmake -E cmake_link_script CMakeFiles/breakpoint_calculator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -o ../../../bin/breakpoint_calculator  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Building CXX object extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o -MF CMakeFiles/bisar.dir/bisar.cpp.o.d -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h:28:57: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   28 | struct FunctorDna5OrdValueComplement<int> : public std::unary_function<int,int>
      |                                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   297 |     return value(me);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                          ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:   294 |         postProcessMain(options, BsNonSimple());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                          ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   127 |         std::cout << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   127 |         std::cout << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   157 |                 else if (*itR == *itC || (*itR == 'T' && *itC == 'C')) ++matches;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                          ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19:   required from ‘int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TId = unsigned int; TBsScoreCTLeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreCTRight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseCT_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGALeft = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Left_>, seqan::Tag<seqan::InnerCell_> > >; TBsScoreGARight = seqan::Score<int, seqan::BsTagList<seqan::Tag<seqan::BsCaseGA_>, seqan::Tag<seqan::BsNonSimple_>, seqan::Tag<seqan::Right_>, seqan::Tag<seqan::InnerCell_> > >; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   127 |         std::cout << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1289 |         reAlign4(readGaps, contigGaps, store, id, scoringSchemeCTLeft, scoringSchemeCTRight, scoringSchemeGALeft, scoringSchemeGARight, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1256:18:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1256 |         TReadSeq readSeq =  store.readSeqStore[readId];
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:242:20:   required from ‘int writeBsAlignment(TStream&, const seqan::BamIOContext<TNameStore, TNameStoreCache>&, TFragmentStore&, TContigGaps&, TId&, TScore&, seqan::BamAlignmentRecord&, TOptions&) [with TStream = std::basic_fstream<char>; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TNameStoreCache = seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TId = unsigned int; TScore = double; TOptions = AppOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   242 |         Dna5String tmpReadSeq = readSeq;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1194:41:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1194 |                         writeBsAlignment(outStream, bamIOContext, store, setContigGaps[verifiedMates.alignedReadIdL], verifiedMates.alignedReadIdL, verifiedMates.mapqL, verifiedMates.recordL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   102 |                 appendMatePair(store, seq[0], seq[1], _id[0], _id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1117 |         loadReadsCroppedId(store, options.readFileName, options.readFileName2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig<MyFragmentStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17:   required from ‘bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   102 |                 appendMatePair(store, seq[0], seq[1], _id[0], _id[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27:   required from ‘bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1117 |         loadReadsCroppedId(store, options.readFileName, options.readFileName2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |         postProcessMain(options, BsNonSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 38%] Linking CXX executable ../../../bin/bisar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../../bin/bisar  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target bisar
make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Building CXX object extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o -MF CMakeFiles/casbar.dir/casbar.cpp.o.d -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/../../extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:64:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:6,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:72:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:42:57: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   42 | struct FunctorDna5OrdValueComplement<int> : public std::unary_function<int,int>
      |                                                         ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:17:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   17 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:66:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   66 |     struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool >
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:81:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   81 |         public ::std::binary_function < typename Value<TMatches>::Type, typename Value<TMatchQualities>::Type, bool >
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:129:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  129 |     struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:142:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  142 |     struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:165:40: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  165 |     struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                        ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:184:42: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  184 |     struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:206:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 |     struct HigherQ : public ::std::binary_function < TQual, TQual, bool >
      |                                    ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TDifference = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1189 |     return begin(me, tag_) + pos;
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1387:36:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1387 |         TContigGapIter refIt = iter(referenceGaps,candidateViewPos-refStart);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1286 |     int result = detectSNPs(options, methOptions);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1527 |                 std::cout << "  contigGaps: " << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1527 |                 std::cout << "  contigGaps: " << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37:   required from ‘TStream& seqan::operator<<(TStream&, const Gaps<TSource, TSpec>&) [with TStream = std::basic_ostream<char>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1180 |             stream << convert<char>(*it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47:   required from ‘void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1527 |                 std::cout << "  contigGaps: " << contigGaps << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   765 |                 doSnpAndMethCalling(fragmentStoreTmp,  startCoord, currentWindowBegin, currentWindowEnd, false, vcfStream, bedStream, methOptions, options);    //bs
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36:   required from ‘void seqan::write(TFile&, const Gaps<TSource, TSpec>&, const TIDString&, Raw) [with TFile = std::basic_ostream<char>; TSource = String<char, Alloc<> >; TIDString = char [1]; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1157 |                         streamPut(target, convert<char>(*begin_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7:   required from ‘void seqan::_printRead(TStream&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2110 |         write(stream, readGaps, "", format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1195 |                 printAlignment(std::cout, Raw(), layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36:   required from ‘void seqan::write(TFile&, const Gaps<TSource, TSpec>&, const TIDString&, Raw) [with TFile = std::basic_ostream<char>; TSource = String<char, Alloc<> >; TIDString = char [1]; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1157 |                         streamPut(target, convert<char>(*begin_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7:   required from ‘void seqan::_printRead(TStream&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2110 |         write(stream, readGaps, "", format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1195 |                 printAlignment(std::cout, Raw(), layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TDifference = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:343:54:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   343 |         TContigIterator cit = begin(contigGaps, Standard()) + (_min(alignedRead.beginPos, alignedRead.endPos) + beginPosition(readGaps));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<const Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36:   required from ‘void seqan::write(TFile&, const Gaps<TSource, TSpec>&, const TIDString&, Raw) [with TFile = std::basic_ostream<char>; TSource = String<char, Alloc<> >; TIDString = char [1]; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >; Raw = Tag<TagRaw_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1157 |                         streamPut(target, convert<char>(*begin_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7:   required from ‘void seqan::_printRead(TStream&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2110 |         write(stream, readGaps, "", format);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream<char>; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1195 |                 printAlignment(std::cout, Raw(), layout, fragStoreGroup, 0, (TContigPos)(maxPos-100), (TContigPos)maxPos, 0, 150);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = const seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                                                              ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                                                                                              ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                                                                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  211 |     return TProxy(it);
      |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   initializing argument 1 of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’
   99 |     Proxy(TIterator const _it)
      |           ~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(const seqan::Proxy<seqan::IteratorProxy<TIterator> >&) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                                                                                                                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  106 |             : data_iterator(_other.data_iterator)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:680:15:   required from ‘int readMatchesFromSamBam(TSetContigAnchorGaps&, TReader&, seqan::BamIOContext<TNameStore>&, seqan::BamAlignmentRecord&, TFragmentStore&, TFragmentStore&, TContigId, TContigPos, TContigPos, TOptions&) [with TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigId = int; TContigPos = int; TOptions = SNPCallingOptions; typename seqan::Value<TMatrix>::Type = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   680 |         TRead curr_read = record.seq;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |               ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:697:47:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   697 |             int result = readMatchesFromSamBam(setContigAnchorGaps, *recordReaders[j], contexts[j], records[j], fragmentStoreTmp, fragmentStore1,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                          ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     698 |                                                currContigId, currentWindowBegin, currentWindowEnd, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                                                                              ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of ‘seqan::Proxy<seqan::IteratorProxy<TIterator> >::Proxy(TIterator) [with TIterator = seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12:   required from ‘typename seqan::Reference<seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > >::Type seqan::value(Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&) [with TGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; typename Reference<Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > > >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   211 |     return TProxy(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17:   required from ‘typename seqan::Reference<seqan::Iter<TContainer, TSpec> >::Type seqan::operator*(Iter<TContainer, TSpec>&) [with TContainer = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TSpec = GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; typename Reference<Iter<TContainer, TSpec> >::Type = Proxy<IteratorProxy<Iter<Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   297 |     return value(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119:   required from ‘void seqan::_printRead(SVGFile&, const Tag<TSpec>&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TReadGaps = Gaps<String<char, Alloc<> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement<int, GapAnchor<int>, void>; TLine = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   352 |                 if (lastWasGap != inGap || inGap != static_cast<int>(isGap(cit)) || (!inGap && convert<Dna5>(*cit) != convert<Dna5>(*it)))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                                                                                                                     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14:   required from ‘void seqan::printAlignment(TStream&, const Tag<TSpec>&, AlignedReadLayout&, FragmentStore<TSpec, TConfig>&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig<SnpStoreSpec_>; TContigId = int; TPos = int; TNum = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2278 |                         _printRead(stream, format, layout, contigGaps, readGaps, align, line);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27:   required from ‘void reAlign(seqan::FragmentStore<TSpec, TConfig>&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig<seqan::SnpStoreSpec_>; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag<seqan::BsSimple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   633 |             printAlignment(svg, Raw(), layout, fragStore, 0, (TContigPos)0, (TContigPos)200, 0, 300);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12:   required from ‘void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   245 |     reAlign(fragmentStore, 0, bandWidth, true, methOptions, BsSimple());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29:   required from ‘void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigPos = int; TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1231 |                 doRealigning(fragStoreGroup, groupWindowBegin, groupWindowBegin, methOptions, options);   // TODO: do only for reads spanning potential indel position
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35:   required from ‘bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   752 |                 doCheckRealignCall(fragmentStoreTmp, startCoord, currentWindowBegin, currentWindowEnd, setContigAnchorGaps, vcfStream, bedStream, methOptions, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from ‘int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   919 |             detectSNPsForContig(tempVcfStream, tempBedStream, fragmentStore1, currContigId, recordReaders, contexts, records, contigIntervals, options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1286 |     int result = detectSNPs(options, methOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  100 |             : data_iterator(_it)
      |               ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<char, seqan::Alloc<> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  564 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
  565 |             case 'D':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreCT_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  190 |                 me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0;   // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here
  191 |             case -1: // Ref gap
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreCTRight_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  190 |                 me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0;   // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here
  191 |             case -1: // Ref gap
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreGA_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  265 |                 me.targetFreqs[i][3] += (1.0/sum)/4.0;                  // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here
  266 |             case -1: // Ref gap
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function ‘void seqan::assignTargetFreqs(Score<TValue, BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String<ProfileChar<SimpleType<unsigned char, DnaMR_>, double> >; TBsProfileScore = const Tag<BsProfileScoreGARight_>; TModel = Tag<BsSimple_>; TCellDescriptor = Tag<InnerCell_>; TMethOptions = MethCallingOptions]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
  265 |                 me.targetFreqs[i][3] += (1.0/sum)/4.0;                  // T
      |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here
  266 |             case -1: // Ref gap
      |             ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 39%] Linking CXX executable ../../../bin/casbar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../../bin/casbar  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 39%] Built target casbar
make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 39%] Building CXX object extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o -MF CMakeFiles/four2three.dir/four2three.cpp.o.d -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:14:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   14 | struct ConvertCT : public ::std::unary_function<char,char>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:23:34: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   23 | struct ConvertGA : public ::std::unary_function<char,char>
      |                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 40%] Linking CXX executable ../../../bin/four2three
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../../bin/four2three  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color="
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[ 41%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -MF CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o.d -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:219:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   219 |         if (readSequence(contigSeq, faiIndex, i) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 41%] Linking CXX executable ../../../bin/fx_bam_coverage
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../../bin/fx_bam_coverage  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Built target fx_bam_coverage
make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 42%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -MF CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o.d -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
                 from /usr/include/c++/14/map:62,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:35:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:580:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, TQualString&, RecordReader<TFile, TSpec>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TQualString = String<char, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   580 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:458:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, TQualities&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TQualities = seqan::String<char, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   458 |                 res = seqan::readRecord(id, seq, qual, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:680:38:   required from ‘int seqan::readRecord(TId&, TSequence&, TQualities&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TQualities = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   680 |         res = seqIO._impl->readRecord(id, seq, qual, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:303:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   303 |         if (readRecord(id, seq, quals, inStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 43%] Linking CXX executable ../../../bin/fx_fastq_stats
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../../bin/fx_fastq_stats  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 43%] Built target fx_fastq_stats
make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 44%] Building CXX object extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o -MF CMakeFiles/gustaf.dir/gustaf.cpp.o.d -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:30:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:154:32: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 | struct LessPos : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:206:35: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  206 | struct LessLength : public ::std::binary_function <TMatch, TMatch, bool> {
      |                                   ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/parse_lm.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/create_stellarmatches_from_file.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_parseOptions.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_out.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:30:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:47: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
      |                                               ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:701:74: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  701 |                 Segment<typename Infix<TPatternSeq>::Type, InfixSegment> patternSegment(patternInfixSeq,
      |                                                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   initializing argument 1 of ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
  151 |     Segment(typename Parameter_<THost>::Type _host, typename Position<THost>::Type _begin_index, typename Position<THost>::Type _end_index):
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29:   required from ‘seqan::Segment<THost_, seqan::InfixSegment>::Segment(typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type, typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position<typename seqan::Host<seqan::Segment<THost_, seqan::InfixSegment> >::Type>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   152 |         data_host(_toPointer(_host)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                   ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:33:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   688 |                 Segment<TInfix, InfixSegment> finderSegment(finderInfixSeq,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                                               ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:199:24: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  199 |                 TAlign ali(align);
      |                        ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<const T>::Type seqan::_toParameter(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<const T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(const Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   252 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:587:88:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   587 |     TScore mismatchIndel = (TScore)_max((TScore) ceil(-1/eps) + 1, -(TScore)length(host(infH)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                                                                    ~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  444 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   185 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Dependent<Tag<TagInsist_> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = BucketMap<long long unsigned int>; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag<OpenAddressing_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >; TSpec = IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   185 |     indexRequire(qgramIndex, QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:785:16:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   785 |         integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   809 |     integrateAlign(align, localAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::_toParameter(T&) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32:   required from ‘typename seqan::Parameter_<T>::Type seqan::host(Segment<THost_, InfixSegment>&) [with THost_ = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   244 |     return _toParameter<THost_>(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:780:28:   required from ‘void integrateAlign(seqan::Align<TSource, TSpec>&, const seqan::Align<seqan::Segment<typename seqan::Infix<THost>::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec1 = seqan::Tag<seqan::ArrayGaps_>; TSpec2 = seqan::Tag<seqan::ArrayGaps_>; typename seqan::Infix<THost>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   780 |                 pos += beginPosition(host(source(row(infixAlign, i))));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   809 |     integrateAlign(align, localAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  437 |     return _object;
      |            ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String<TCargo>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15:   required from ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<unsigned int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1917 |         findIntervals(g, pm, act_knot, query_begin, query_end, result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, TValue, String<TAlphabet>&) [with TValue = unsigned int; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1898 |         findIntervals(tree.g,tree.pm,query_begin,query_end,result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:240:18:   required from ‘bool _checkRightMateMatches(const TMatch&, const seqan::String<TString>&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   240 |     findIntervals(gustafChain.rightMateTree, mateIntervalBegin, mateIntervalEnd, confMateMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:278:42:   required from ‘bool _checkMateMatches(const TMatch&, const seqan::String<TString>&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   278 |             return _checkRightMateMatches(sMatch, queryMatches, gustafChain, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:345:35:   required from ‘void _initialiseGraphMatePairs(QueryMatches<StellarMatch<TSequence, TId> >&, TMSplazerChain&, const MSplazerOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   345 |             if (!_checkMateMatches(queryMatches.matches[i], queryMatches.matches, chain, options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_algorithms.h:644:42:   required from ‘void _chainQueryMatches(seqan::StringSet<QueryMatches<StellarMatch<TSequence, TId> > >&, seqan::String<TSequenceValue>&, seqan::String<TEmission>&, const seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&, const MSplazerOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TScoreAlloc = seqan::String<int>; TMSplazerChain = MSplazerChain<seqan::Graph<seqan::Directed<int> >, unsigned int, seqan::String<int>, SparsePropertyMap<Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, unsigned int>, seqan::String<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   644 |                 _initialiseGraphMatePairs(stellarMatches[i], chain, msplazerOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:224:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   224 |     _chainQueryMatches(stellarMatches, distanceScores, queryChains, queryIDs, queries, readJoinPositions, msplazerOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1949 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1961 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1982 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<unsigned int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<unsigned int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13:   required from ‘typename seqan::Needle<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::needle(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftLocal_> >; typename Needle<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Dependent<Tag<TagInsist_> > >, IndexQGram<UngappedShape<0>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   447 |         return host(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                ~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:698:78:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   698 |                 TPatternSeq patternSeq = getSequenceByNo(pattern.curSeqNo, indexText(needle(pattern)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                                                      ~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TShapeSpec = seqan::UngappedShape<0>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<TSource, TSpec>&, const String<TCargo>&) [with TSource1 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSource2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec2 = Tag<ArrayGaps_>; TPos = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19:   required from ‘void seqan::integrateAlign(Align<TSource, TSpec>&, const Align<typename Infix<THost>::Type, TSpec2>&) [with TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec1 = Tag<ArrayGaps_>; TSpec2 = Tag<ArrayGaps_>; typename Infix<THost>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   154 |     integrateAlign(align, infixAlign, viewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:620:16:   required from ‘void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TCoord = seqan::Pair<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   620 |         integrateAlign(align, infixAlign);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:753:17:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   753 |                 _tracebackLeft(matrixLeft, (*endPair.i1).coord, infH, infV, seed, seedOld, endLeftH, endLeftV, align);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >& seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::operator=(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&)’ is deprecated [-Wdeprecated-copy]
  124 |         it = iter(row(align, i), value(viewPos, i));
      |         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >’ has user-provided ‘seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >::Iter(const seqan::Iter<TGaps, seqan::GapsIterator<seqan::Tag<seqan::ArrayGaps_> > >&) [with TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
   91 |     Iter(Iter const & other) :
      |     ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:121:8:   required from ‘bool _writeGlobalBreakpoints(const seqan::String<TString>&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TId>&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::Vcf = seqan::Tag<seqan::Vcf_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   121 | struct Breakpoint
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |        ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:271:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:   271 |     _writeGlobalBreakpoints(globalBreakpoints, databases, databaseIDs, msplazerOptions, Vcf());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >*; TParam = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >*; TParam = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >, seqan::Alloc<> >; TValue = const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TTargetSpec = Alloc<>; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >, Alloc<> >; TValue = Align<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   222 |                 appendValue(alignmentString, ali);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   177 |         append(seq, seqL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    72 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, shortQueryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>, Tag<Tristate_> >; TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Value<TIterator>::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:401:10:   required from ‘void seqan::assignSource(Gaps<TSequence, Tag<ArrayGaps_> >&, const TSequence2&) [with TSequence = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>; TSequence2 = Segment<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   401 |     value(gaps._source) = source;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:614:17:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   614 |     assignSource(row(localAlign, 0), infH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:402:13:   required from ‘void _fillMatrixBestEndsLeft(TMatrix&, seqan::String<TAlphabet>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, const seqan::Segment<TSequence, seqan::InfixSegment>&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String<seqan::SimpleType<unsigned char, seqan::TraceBack_> >; TPossEnd = ExtensionEndPosition<unsigned int>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   402 |         appendValue(str, infixH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   703 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15:   required from ‘bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   177 |         append(seq, seqL);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    72 |         if (!_importSequences(msplazerOptions.queryFile[0], msplazerOptions.queryFile[1], msplazerOptions.revCompl, queries, queryIDs, shortQueryIDs, readJoinPositions))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   703 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, TraceBack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, TraceBack_>; TValueTarget = SimpleType<unsigned char, TraceBack_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, TraceBack_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from ‘bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   703 |                 _fillMatrixBestEndsLeft(matrixLeft, possibleEndsLeft, infH, infV, seed, seedOld, scoreMatrix);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from ‘bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   860 |                 if (!_bestExtension(infixH, infixV, seed, seedOld, alignLen, alignErr, scoreMatrix, direction, minLength, eps, align))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   643 |                         if (!_extendAndExtract(*aliIt, scoreDropOff, scoreMatrix, infH, infV, direction, minLength, eps, align)) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::TraceBack_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<unsigned int, unsigned int, int, void>; TSource = Triple<unsigned int, unsigned int, int, void>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<unsigned int, unsigned int, int, void>; TSource = Triple<unsigned int, unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<unsigned int, unsigned int, int, void>*; TSource1 = Triple<unsigned int, unsigned int, int, void>*; TSource2 = Triple<unsigned int, unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<unsigned int, unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<unsigned int, unsigned int, int, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<unsigned int, unsigned int, int, void>*; TSource1 = Triple<unsigned int, unsigned int, int, void>*; TSource2 = Triple<unsigned int, unsigned int, int, void>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1929:12:   required from ‘void seqan::replace(TTarget&, TPositionBegin, TPositionEnd, const TSource&) [with TTarget = String<Triple<unsigned int, unsigned int, int, void>, Alloc<> >; TPositionBegin = int; TPositionEnd = int; TSource = String<Triple<unsigned int, unsigned int, int, void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1929 |     replace(target, pos_begin, pos_end, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:224:20:   required from ‘void _splitAtXDrops(TAlign&, seqan::Score<TScoreValue, seqan::Tag<seqan::Simple_> >&, TScoreValue1, TScoreValue2, seqan::String<TString>&) [with TAlign = seqan::Align<seqan::Segment<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag<seqan::ArrayGaps_> >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   224 |             replace(queue, 0, 2, String<TMerger>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23:   required from ‘void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   624 |         _splitAtXDrops(localAlign, scoreMatrix, scoreDropOff, minScore, seedAlignments);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from ‘void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   716 |                 verifySwiftHit(finderSegment, patternSegment, epsilon, minLength, xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                            pattern.bucketParams[0].delta + pattern.bucketParams[0].overlap, disableThresh, compactThresh,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     718 |                                            numMatches, databaseID, dbStrand, value(matches, pattern.curSeqNo), tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from ‘void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             stellar(swiftFinder, swiftPattern, stellarOptions.epsilon, stellarOptions.minLength, stellarOptions.xDrop,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     198 |                     stellarOptions.disableThresh, stellarOptions.compactThresh, stellarOptions.numMatches,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     199 |                     stellarOptions.verbose, databaseIDs[i], true, stellarMatches, AllLocal());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   145 |         _getStellarMatches(queries, databases, databaseIDs, stellarOptions, stellarMatches);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, unsigned int, int, void>& seqan::Triple<unsigned int, unsigned int, int, void>::operator=(const seqan::Triple<unsigned int, unsigned int, int, void>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<unsigned int, unsigned int, int, void>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = unsigned int; T2 = unsigned int; T3 = int; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 44%] Linking CXX executable ../../../bin/gustaf
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../../bin/gustaf  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 44%] Built target gustaf
make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 45%] Building CXX object extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o -MF CMakeFiles/insegt.dir/insegt.cpp.o.d -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:14:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:16:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:21:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h: In function ‘void seqan::createAnnoCountGFF(TFile&, TAnnoCountStore&, TAnnoNormStore&, FragmentStore<TSpec, TConfig>&, TMap&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:225:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  225 |         if (getValue(itAnno).typeId != INVALID_ID)
      |         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:228:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  228 |                 if (getValue(itAnno).contigId == INVALID_ID )
      |                 ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:23:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h: In function ‘bool seqan::ngsOverlapper(TOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  901 |     if (!readOutput.good())
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:903:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |         createReadCountGFF(readOutput, readAnnoStore, fragStore);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:908:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  908 |     if (!annoOutput.good())
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:910:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  910 |         createAnnoCountGFF(annoOutput, annoCountStore, annoNormStore, fragStore, mapO);
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:915:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  915 |     if (!tupleOutput.good())
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:917:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  917 |         createTupleCountGFF(tupleOutput, tupleCountStore, fragStore, options.thresholdCount, options.thresholdRPKM);
      |         ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp: In function ‘int main(int, const char**)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:188:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  188 |     if (res != ArgumentParser::PARSE_OK)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  191 |         if (options.maxTuple)
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h: In instantiation of ‘seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> > seqan::nodeDown(const Iter<TFragmentStore, AnnotationTree<TSpec> >&) [with TFragmentStore = FragmentStore<>; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:45:64:   required from ‘void seqan::adjustParentEntries(FragmentStore<TSpec, TConfig>&) [with TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:    45 |             getAnnotation(it).contigId = getAnnotation(nodeDown(it)).contigId;  // If no child exists: nothing happens
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:       |                                                        ~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:865:21:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:   865 |         adjustParentEntries(fragStore);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1281:54: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >::Iter(const seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >&)’ is deprecated [-Wdeprecated-copy]
 1281 |         Iter<TFragmentStore, AnnotationTree<TSpec> > tmp(it);
      |                                                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because ‘seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >’ has user-provided ‘const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >& seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >::operator=(const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]’
  415 |         operator = (Iter const &_origin)
      |         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1283:16: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >::Iter(const seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >&)’ is deprecated [-Wdeprecated-copy]
 1283 |         return tmp;
      |                ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because ‘seqan::Iter<seqan::FragmentStore<>, seqan::AnnotationTree<> >’ has user-provided ‘const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >& seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >::operator=(const seqan::Iter<TFragmentStore, seqan::AnnotationTree<TSpec> >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]’
  415 |         operator = (Iter const &_origin)
      |         ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, unsigned int>, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_intervaltree.h:182:15:   required from ‘void seqan::findIntervalsForInterval(String<TSequenceValue>&, TIntervalTree&, TInterval&, const unsigned int&) [with TIntervalTree = IntervalTree<int, unsigned int>; TInterval = Interval<unsigned int>; TCargo = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   182 |         findIntervals(intervalTree.g, intervalTree.pm, interval.i1 + offsetInterval, result1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:82:27:   required from ‘void seqan::getIdsForRead(TAnnoIds&, FragmentStore<TSpec, TConfig>&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet<String<unsigned int, Alloc<> >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TIntervalTree = IntervalTree<int, unsigned int>; TIntervals = String<Interval<unsigned int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:    82 |                 findIntervalsForInterval(value(itR), intervalTree, getValue(itI), offsetInterval);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/fusion.h:775:18:   required from ‘void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore<TSpec, TConfig>&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String<ReadAnnoStoreElement<unsigned int> >; TAnnoCountStore = String<unsigned int, Alloc<> >; TTupleCountStore = String<TupleCountStoreElement<unsigned int> >; TTupleCountStore_Fusion = String<TupleCountStoreElement_Fusion<unsigned int> >; TSpec = void; TConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   775 |                                 getIdsForRead(ids, fragStore, *intervalTree, getValue(it).intervals, offsetInterval);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |                                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:884:20:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   884 |                 getResults_Fusion(readAnnoStore, annoCountStore, tupleCountStore, tupleCountStore_Fusion, fragStore, options.nTuple, options.exact_nTuple, options.offsetInterval, options.thresholdGaps, options.unknownO);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1827 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1838 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1859 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, unsigned int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, unsigned int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TDifference = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TPosition = int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  2801 |                                                                 insertGaps(gaps, insPos - rBegin, blkLen);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>*; TParam = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>; TValue2 = const Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>; TSource = Segment<String<GapAnchor<int>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  2738 |                 TContigGapsPW           contigGapsPW(/*contigInfix, */gaps[(*it).id]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:13:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TValue2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSource = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1018 |         create(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15:   required from ‘void seqan::convertPairWiseToGlobalAlignment(FragmentStore<TSpec, TConfig>&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TContigGapsString = StringSet<String<GapAnchor<int>, Alloc<> >, Owner<ConcatDirect<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2739 |                 TReadGaps                       readGaps(store.readSeqStore[(*it).readId], (*it).gaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   459 |             convertPairWiseToGlobalAlignment(fragStore, contigAnchorGaps);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>, Alloc<> >; TValue = ContigStoreElement<String<SimpleType<unsigned char, Dna5Q_> >, GapAnchor<int>, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1117:14:   required from ‘void seqan::_storeAppendContig(FragmentStore<TSpec, TConfig>&, TId&, TName&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TId = unsigned int; TName = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1117 |                 appendValue(fragStore.contigStore, TContigElement());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:256:23:   required from ‘void seqan::_storeOneAnnotation(TFragmentStore&, IOContextGff_<TFragmentStore, TSpec>&) [with TFragmentStore = FragmentStore<>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   256 |     _storeAppendContig(fragStore, ctx.annotation.contigId, ctx.contigName);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:331:32:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Gff) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Gff = Tag<TagGff_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   331 |             _storeOneAnnotation(fragStore, ctx);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:861:10:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   861 |             read(fileGFF, fragStore, Gff());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30:   required from ‘void seqan::_readAlignments(TStreamOrReader&, BamIOContext<TNameStore, TNameStoreCache>&, FragmentStore<TSpec, TConfig>&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > >, String<char, Alloc<> > >; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigAnchorGaps = StringSet<String<GapAnchor<int>, Alloc<> >, Owner<ConcatDirect<void> > >; TMatchMateInfos = String<MatchMateInfo_<int, unsigned int>, Alloc<> >; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   577 |             _readOneAlignment(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, contextSAM,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     578 |                               importFlags, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |         _readAlignments(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, tag, importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30:   required from ‘void seqan::_readAlignments(TStreamOrReader&, BamIOContext<TNameStore, TNameStoreCache>&, FragmentStore<TSpec, TConfig>&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TNameStore = StringSet<String<char, Alloc<> > >; TNameStoreCache = NameStoreCache<StringSet<String<char, Alloc<> > >, String<char, Alloc<> > >; TSpec = void; TConfig = FragmentStoreConfig<void>; TContigAnchorGaps = StringSet<String<GapAnchor<int>, Alloc<> >, Owner<ConcatDirect<void> > >; TMatchMateInfos = String<MatchMateInfo_<int, unsigned int>, Alloc<> >; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   577 |             _readOneAlignment(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, contextSAM,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     578 |                               importFlags, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                               ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24:   required from ‘void seqan::_readImpl(TStreamOrReader&, FragmentStore<TSpec, TConfig>&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader<std::basic_fstream<char>, SinglePass<void> >; TSpec = void; TConfig = FragmentStoreConfig<void>; TTag = Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |         _readAlignments(streamOrReader, bamIOContext, fragStore, contigAnchorGaps, matchMateInfos, tag, importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   474 |         _readImpl(reader, fragStore, Sam(), importFlags);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from ‘void seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = FragmentStoreConfig<void>; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   496 |         read(file, fragStore, Sam(), FragStoreImportFlags());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from ‘bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   838 |         read(fileSAM, fragStore, Sam());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |         ngsOverlapper(options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  534 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
  535 |             case 'I':
      |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function ‘unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String<CigarElement<> >; TGaps = Gaps<Nothing, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
  564 |                 insertGaps(it, cigar[i].count);
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
  565 |             case 'D':
      |             ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 46%] Linking CXX executable ../../../bin/insegt
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../../bin/insegt  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 46%] Built target insegt
make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 47%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/vector:68,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:49:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 47%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, GenomicInterval>, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = GenomicInterval]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, String<TAlphabet>&) [with TValue = int; TCargo = GenomicInterval]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1886 |         findIntervals(it.g,it.pm,query,result);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:644:18:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   644 |     findIntervals(svIntervalTree, svPos, intervals);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1827 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1838 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1859 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, GenomicInterval>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, GenomicInterval>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   234 |                 append(seq, infix(contig, lastPos, snpRecord.pos));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:246:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   246 |                 appendValue(seq, snpRecord.to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   234 |                 append(seq, infix(contig, lastPos, snpRecord.pos));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
[ 49%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
[ 49%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:372:24:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   372 |             appendValue(seq, seqan::Dna(i % 4));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = char; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = char]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:69:28:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    69 |                 appendValue(contig, 'A');
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 52%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                                        ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  161 |             _host(std::forward<THost_>(host))
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  165 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   111 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   166 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   161 |             _host(std::forward<THost_>(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                        ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   670 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   452 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:193:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   193 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   259 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, lenInRef)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:201:28:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   201 |                 appendValue(read, *it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:257:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   257 |         _simulateSequence(seq, rng, prefix(frag, lenInRef), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 52%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                                                            ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  161 |             _host(std::forward<THost_>(host))
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  165 |     ModifiedString(typename Parameter_<THost>::Type host):
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   111 | class ModifiedIterator<THost, ModView<TFunctor> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = const String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25:   required from ‘seqan::ModifiedString<THost, seqan::ModView<TFunctor> >::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> >; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   166 |         _host(_toPointer(host)), tmp_value()
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(THost_&&, typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type*) [with THost_ = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::EnableIf<seqan::IsAnInnerHost<typename seqan::RemoveReference<T>::Type, typename seqan::RemoveReference<THost_>::Type> >::Type = void; typename seqan::RemoveReference<T>::Type = seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >; typename seqan::RemoveReference<THost_>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   161 |             _host(std::forward<THost_>(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                            ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, TSpec>, const seqan::Tag<TExpand> >::Type seqan::end(ModifiedString<THost, TSpec>&, Tag<TExpand>) [with THost = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > >; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, TSpec>, const Tag<TExpand> >::Type = ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   670 |     TResult tmp(end(host(me), tag_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102:   required from ‘typename seqan::Iterator<const seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(const ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = ModifiedString<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >; TTagSpec = Standard_; typename Iterator<const ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<ModifiedIterator<Iter<Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<const SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, ModView<FunctorComplement<SimpleType<unsigned char, Dna5_> > > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   452 |     typename Iterator< ModifiedString<THost, ModReverse> const, Tag<TTagSpec> const >::Type temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                                                   ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:59:25:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString<seqan::ModifiedString<seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView<seqan::FunctorComplement<seqan::SimpleType<unsigned char, seqan::Dna5_> > > >, seqan::Tag<seqan::ModReverse_> >; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    59 |     TFragIter it = begin(frag, seqan::Standard());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |         _simulateSequence(seq, rng, TRevCompFrag(prefix(frag, sampleLength)), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1477 |             typename Size<T>::Type new_length = reserve(me, me_length + 1, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TValue = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:67:28:   required from ‘void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    67 |                 appendValue(read, *it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:144:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   144 |         _simulateSequence(seq, rng, prefix(frag, sampleLength), cigar);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 53%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/stdexcept:39,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:268:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   268 |         if (readSequence(seq, faiIndex, currRID) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 54%] Linking CXX static library libmason_sim.a
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1
/usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
/usr/bin/ranlib libmason_sim.a
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Built target mason_sim
make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 55%] Building CXX object extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o -MF CMakeFiles/mason_genome.dir/mason_genome.cpp.o.d -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 55%] Linking CXX executable ../../../bin/mason_genome
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../../bin/mason_genome  -lrt -L/usr/lib -lz libmason_sim.a -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 55%] Built target mason_genome
make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 55%] Building CXX object extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -MF CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o.d -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:166:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   166 |         if (readSequence(contig, faiIndex, i) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 56%] Linking CXX executable ../../../bin/mason_methylation
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../../bin/mason_methylation  -lrt -L/usr/lib -lz libmason_sim.a -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 56%] Built target mason_methylation
make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 57%] Building CXX object extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -MF CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o.d -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   501 |                 res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38:   required from ‘int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   697 |         res = seqIO._impl->readRecord(id, seq, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:202:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   202 |         if (readRecord(fragId, fragSeq, inFragments) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 58%] Linking CXX executable ../../../bin/mason_frag_sequencing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../../bin/mason_frag_sequencing  -lrt -L/usr/lib -lz libmason_sim.a -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Built target mason_frag_sequencing
make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Building CXX object extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o -MF CMakeFiles/mason_variator.dir/mason_variator.cpp.o.d -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:1085:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:  1085 |         resize(tos, options.numHaplotypes, from);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 59%] Linking CXX executable ../../../bin/mason_variator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../../bin/mason_variator  -lrt -L/usr/lib -lz libmason_sim.a -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Built target mason_variator
make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 60%] Building CXX object extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -MF CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o.d -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp: In member function ‘int MasonMaterializerApp::run()’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:110:33: warning: catching polymorphic type ‘class MasonIOException’ by value [-Wcatch-value=]
  110 |         catch (MasonIOException e)
      |                                 ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 61%] Linking CXX executable ../../../bin/mason_materializer
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../../bin/mason_materializer  -lrt -L/usr/lib -lz libmason_sim.a -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target mason_materializer
make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Building CXX object extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -MF CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o.d -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/vector:68,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:40:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<Tristate_> >; TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Value<TIterator>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TValue2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>&]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:243:34:   required from ‘void seqan::_reinitArrayGaps(Gaps<TSequence, Tag<ArrayGaps_> >&) [with TSequence = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   243 |     _setLength(gaps, length(value(gaps._source)));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                             ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:153:25:   required from ‘seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> >::Gaps(TSequence&) [with TSequence = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   153 |         _reinitArrayGaps(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:221:57:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:   221 |         seqan::Gaps<TContigInfix> gapsContig(contigInfix);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note:       |                                                         ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:24:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   476 |     TConstSeqHIterator seqHIter = begin(seqH, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52:   required from ‘void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_<TAlgorithm, TGapCosts, TTracebackSpec>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TBand = DPBand_<Tag<BandOn_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1205 |     TConstSeqHIterator itH = begin(seqH, Rooted()) + _max(0, _min(seqHlength - 1, upperDiagonal(band)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |         _computeHammingDistance(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, band, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  619 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:40:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   476 |     TConstSeqHIterator seqHIter = begin(seqH, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                   ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:41:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator-(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, int) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5_>*; TSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   686 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) - right);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58:   required from ‘void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TDPScout = DPScout_<DPCell_<int, Tag<LinearGaps_> >, If<HasTerminationCriterium_<GlobalAlignment_<FreeEndGaps_<> > >, Terminator_<>, Tag<Default_> > >; TDPScoreMatrixNavigator = DPMatrixNavigator_<DPMatrix_<DPCell_<int, Tag<LinearGaps_> >, Tag<SparseDPMatrix_> >, Tag<DPScoreMatrix_>, Tag<NavigateColumnWise_> >; TDPTraceMatrixNavigator = DPMatrixNavigator_<DPMatrix_<unsigned char, Tag<FullDPMatrix_> >, DPTraceMatrix<TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > > >, Tag<NavigateColumnWise_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoringScheme = Score<int, Tag<Simple_> >; TAlignmentAlgo = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   477 |     TConstSeqHIterator seqHIterEnd = end(seqH, Rooted()) - 1;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~~~~~~~~~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34:   required from ‘typename seqan::Value<TKeywords>::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_<TBandSwitch>&, const DPProfile_<TAlignmentAlgo, TGapCosts, TTraceFlag>&) [with TTraceTarget = String<TraceSegment_<unsigned int, unsigned int> >; TScoutState = DPScoutState_<Tag<Default_> >; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreScheme = Score<int, Tag<Simple_> >; TBandSwitch = Tag<BandOn_>; TAlignmentAlgorithm = GlobalAlignment_<FreeEndGaps_<> >; TGapCosts = Tag<LinearGaps_>; TTraceFlag = TracebackOn<TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> > >; typename Value<TKeywords>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1419 |         _computeUnbandedAlignment(dpScout, dpScoreMatrixNavigator, dpTraceMatrixNavigator, seqH, seqV, scoreScheme, dpProfile);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TRightValue, TRightSpec>&, DPScoutState_<TDPScoutStateSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag<Default_>; TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   675 |         return _computeAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, DPBand_<BandOn>(lowerDiagonal, upperDiagonal), TDPProfile());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; TGapsTag = TracebackConfig_<Tag<SingleTrace_>, Tag<GapsLeft_> >; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   716 |     return _setUpAndRunAlignment(traceSegments, noState, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     717 |                                  upperDiagonal, algoTag, gapsTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33:   required from ‘typename seqan::Value<seqan::Score<TScoreValue, TScoreSpec> >::Type seqan::_setUpAndRunAlignment(String<TValue, TSpec>&, const TSequenceH&, const TSequenceV&, const Score<TScoreValue, TScoreSpec>&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_<unsigned int, unsigned int>; TSpec = Alloc<>; TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TScoreValue = int; TScoreSpec = Tag<Simple_>; TAlignConfig = AlignConfig<>; TAlgoTag = Tag<NeedlemanWunsch_>; typename Value<Score<TScoreValue, TScoreSpec> >::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   732 |     return _setUpAndRunAlignment(traceSegments, seqH, seqV, scoringScheme, alignConfig, lowerDiagonal, upperDiagonal,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     733 |                                  algoTag, TracebackConfig_<SingleTrace, GapsLeft>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int, const TAlgoTag&) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>; TAlgoTag = Tag<NeedlemanWunsch_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   172 |     TScoreValue res = _setUpAndRunAlignment(traceSegments, source(gapsH), source(gapsV), scoringScheme, alignConfig,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     173 |                                             lowerDiag, upperDiag, algoTag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, const AlignConfig<TTop, TRight, TLeft, TBottom, TACSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   209 |         return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag, NeedlemanWunsch());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27:   required from ‘TScoreValue seqan::globalAlignment(Gaps<TSequence, TSpec>&, Gaps<TSequenceV, TGapsSpecV>&, const Score<TScoreValue, TScoreSpec>&, int, int) [with TSequenceH = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TGapsSpecH = Tag<ArrayGaps_>; TSequenceV = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TGapsSpecV = Tag<ArrayGaps_>; TScoreValue = int; TScoreSpec = Tag<Simple_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   226 |     return globalAlignment(gapsH, gapsV, scoringScheme, alignConfig, lowerDiag, upperDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   229 |         editDistance = globalAlignment(gapsContig, gapsRead, sScheme, lDiag, uDiag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1925 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, const TValue2&, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType<unsigned char, Dna5_>; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1964 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length, val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = unsigned int; TValue = SimpleType<unsigned char, Dna5_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from ‘int seqan::readRegion(String<TValue, TSpec>&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   426 |     resize(str, toRead, TValue());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from ‘int seqan::readSequence(String<TValue, TSpec>&, const FaiIndex&, unsigned int) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   505 |     return readRegion(str, index, refId, 0, sequenceLength(index, refId));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:817:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   817 |             if (readSequence(refSeq, vcfMat.faiIndex, rID) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 62%] Linking CXX executable ../../../bin/mason_simulator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../../bin/mason_simulator  -lrt -L/usr/lib -lz libmason_sim.a -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 62%] Built target mason_simulator
make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 63%] Building CXX object extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -MF CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o.d -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function ‘int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  190 |     else
      |     ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  192 |         streamWriteChar(stream, '\t');
      |         ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp: In member function ‘int MasonSplicingApp::run()’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning: catching polymorphic type ‘class MasonIOException’ by value [-Wcatch-value=]
  138 |         catch (MasonIOException e)
      |                                 ^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:   292 |                 append(transcript, buffer);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from ‘void seqan::append(TTarget&, TSource&) [with TTarget = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1608 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                 append(transcript, buffer);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 63%] Linking CXX executable ../../../bin/mason_splicing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../../bin/mason_splicing  -lrt -L/usr/lib -lz libmason_sim.a -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 63%] Built target mason_splicing
make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Building CXX object extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o -MF CMakeFiles/mason_tests.dir/mason_tests.cpp.o.d -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 65%] Linking CXX executable ../../../bin/mason_tests
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../../bin/mason_tests  -lrt -L/usr/lib -lz libmason_sim.a -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 65%] Built target mason_tests
make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 65%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -MF CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o.d -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 66%] Linking CXX executable ../../../bin/roi_plot_thumbnails
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../../bin/roi_plot_thumbnails  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 66%] Built target roi_plot_thumbnails
make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o -MF CMakeFiles/bam2roi.dir/bam2roi.cpp.o.d -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:37:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o -MF CMakeFiles/bam2roi.dir/roi_builder.cpp.o.d -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  343 |         public ::std::binary_function<TVertexDescriptor, TCargo, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function ‘void seqan::njTree(const String<TValue, TSpec>&, Graph<Tree<TCargo, TSpec> >&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  148 |     for (unsigned i = 0; i < length(mat); ++i)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  152 |         String<__int64> av;    // Average branch length to a combined node
      |         ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, StringSet<TSequence, TSpec>&, TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  416 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  420 |         TString seq;
      |         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TNames&, FastaAlign)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  534 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  538 |         String<TValue> mat;
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, String<TRightValue, TRightSpec>&, String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  880 |         TName seq1;
      |         ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function ‘void seqan::read(TFile&, Graph<Tree<TCargo, TSpec> >&, TNames&, NewickFormat)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  985 |     if (atEnd(reader))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  988 |         TVertexDescriptor lastVertex = nilVertex;
      |         ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function ‘void seqan::getGappedConsensus(FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  387 |                 for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 |                         diff = (itGaps->gapPos - itGaps->seqPos);
      |                         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   91 |         public ::std::unary_function<Pair<TSize, TSize>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  102 |         public ::std::unary_function<Pair<TSize, Triple<TSize, TSize, TSize> >, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 68%] Linking CXX executable ../../../bin/bam2roi
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../../bin/bam2roi  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 68%] Built target bam2roi
make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 69%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -MF CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 69%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/gff_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:48:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 70%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:38:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 71%] Linking CXX executable ../../../bin/roi_feature_projection
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../../bin/roi_feature_projection  -lrt -L/usr/lib -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 71%] Built target roi_feature_projection
make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 71%] Building CXX object extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:32:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:38:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h: In function ‘void seqan::pms1(TStrings&, TStrings&, const TType&, const TType&, const bool&, const Oops&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h:264:82: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<int>; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  264 |                                 std::count_if(vect_iter, upper_iter, std::bind2nd(std::equal_to<int>(), *vect_iter));
      |                                                                      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_function.h:1435:
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:66:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h: In function ‘void seqan::_filteringStep(TBucketAr&, TArray&, TType&, TStrings&, TPositions&, const TType&, const TType&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h:627:50: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater_equal<int>; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
  627 |                                           bind2nd(std::greater_equal<int>(),static_cast<int>(s)));
      |                                           ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
  172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
      |     ^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  712 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  740 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  766 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if (skipWhitespaces(reader) != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |         int kickout = 0;
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  373 |     if (pm_options.verbose)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  376 |         resize(avg,pm_options.totalN,(TFloat)0.0);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (value(reader) == 'e')
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  938 |         bool atLeastOneFound = false;
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1466 |         TGenomeInfixRev         infRev(inf);
      |                                 ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1435 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1466 |         TGenomeInfixRev         infRev(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77:   required from ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                   ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1467:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1467 |         TReadRev                        readRev(readSet[rseqNo]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2311:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2311 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   required from ‘bool seqan::find(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double, TSize) [with THaystack = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1876 |         _patternInit(pattern, errorRate, minLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16:   required from ‘bool seqan::find(TFinder&, Pattern<TIndex, Swift<Tag<SwiftSemiGlobal_<TSpec> > > >&, double) [with TFinder = Finder<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1860 |     return find(finder, pattern, errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1689 |         while (find(swiftFinder, swiftPattern, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2314:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2314 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1435 |         TMyersFinder myersFinder(inf);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                      ^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   620 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1661 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1661 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1661 |         TReadSet &readSet = host(host(swiftPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                  ~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >::Index(const seqan::Index<TText, seqan::IndexQGram<TShapeSpec, TSpec> >&) [with TText_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TSpec = seqan::Tag<seqan::Default_>]’
  368 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  333 |         class Index<TText_, IndexQGram<TShapeSpec, TSpec> > {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::Default_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:28:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1450:13:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1450 |         while (find(myersFinder, myersPattern, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1468:19:   required from ‘bool seqan::matchVerify(TMatch&, Segment<TGenome, InfixSegment>, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions<TSpec>&, SwiftSemiGlobal) [with TMatch = ReadMatch<int>; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TMyersPatterns = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TSpec = RazerSSpec<false, true>; SwiftSemiGlobal = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1468 |         TMyersFinderRev         myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15:   required from ‘void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern<TIndex, Swift<TSpec> >&, TVerifier&, TCounts&, char, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenome = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TVerifier = String<Pattern<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Myers<FindInfix, True, void> >, Alloc<> >; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1694 |                         matchVerify(m, infix(swiftFinder), rseqNo, readSet, forwardPatterns, options, TSwiftSpec()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16:   required from ‘void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIDs = StringSet<String<char, Alloc<> > >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TDistr = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   433 |                                 appendValue(readSet, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   755 |         simulateReads(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~^
     756 |                 testReads, dummyIDs, testGenome,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     757 |                 50000, maxErrors+1, logErrorDistribution, 0, 0, 0.5, true);     // generate 50K reads
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18:   required from ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void; typename Parameter_<T>::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |         return container(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1724 |         TSize haystack_length = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13:   required from ‘bool seqan::find(TFinder&, const Pattern<TNeedle, Myers<TSpec, THasState, TFindBeginPatternSpec> >&, PatternState_<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1756 |         return find(finder, pattern, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13:   required from ‘bool seqan::find(TFinder&, Pattern<TNeedle, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1774 |         return find(finder, pattern, pattern, minScore); //static cast
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1473:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2308 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobal>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16:   required from ‘void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadIDs = StringSet<String<char, Alloc<> > >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TDistr = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   433 |                                 appendValue(readSet, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   755 |         simulateReads(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~^
     756 |                 testReads, dummyIDs, testGenome,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     757 |                 50000, maxErrors+1, logErrorDistribution, 0, 0, 0.5, true);     // generate 50K reads
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2300 |                         return mapReads(matches, genomeSet, readSet, cnts, options, onegapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = True]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1593 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned int, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25:   required from ‘void seqan::createQGramIndex(TIndex&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1604 |                         _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, getStepSize(index), False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19:   required from ‘bool seqan::indexCreate(Index<TText, IndexQGram<TShapeSpec, TSpec> >&, FibreSADir, Default) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TShapeSpec = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSpec = Tag<Default_>; FibreSADir = const Tag<FibreSADir_>; Default = Tag<Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2565 |                 createQGramIndex(index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TSpec = IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> >; TFibre = FibreSADir_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21:   required from ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<Default_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         indexRequire(host(pattern), QGramSADir());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2134 |                         mapSingleReads(matches, genomeSet[gseqNo], gseqNo, swiftPattern, forwardPatterns, cnts, 'F', options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  2303 |                         return mapReads(matches, genomeSet, readSet, cnts, options, gapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<float>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<float>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   778 |                                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2087:9:   required from ‘int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2087 |         TIndex swiftIndex(readSet, shape);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions<TSpec>&, const TShape&, Swift<TSwiftSpec>) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCounts = int; TSpec = RazerSSpec<false, true>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2208 |                 return mapSingleReads(matches, genomeSet, readSet, cnts, options, shape, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from ‘int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions<TSpec>&) [with TMatches = String<ReadMatch<int> >; TGenomeSet = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TReadSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec<false, true>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2297 |                         return mapReads(matches, genomeSet, readSet, cnts, options, ungapped, Swift<SwiftSemiGlobalHamming>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<float>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   830 |                                 mapReads(matches, testGenome, testReads,dummy, dummy, razersOptions);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1228 |                 makeSelectedStatsFile(errorDistribution,pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   340 |         chooseParams(r_options, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<HammingDistance_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  636 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here
  638 |                                 case SEQAN_INSERT:
      |                                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  656 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here
  658 |                                 case SEQAN_INSERT:
      |                                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<LevenshteinDistance_>, float>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<float>; TDistance = Tag<LevenshteinDistance_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  636 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here
  638 |                                 case SEQAN_INSERT:
      |                                 ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=]
  656 |                                         ++del;
      |                                         ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here
  658 |                                 case SEQAN_INSERT:
      |                                 ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 72%] Linking CXX executable ../../../bin/param_chooser
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../../bin/param_chooser  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Built target param_chooser
make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Building CXX object extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:42:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  712 |         struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  740 |         struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  766 |         struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool >
      |                                             ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if (skipWhitespaces(reader) != 0)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |         int kickout = 0;
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  373 |     if (pm_options.verbose)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  376 |         resize(avg,pm_options.totalN,(TFloat)0.0);
      |         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function ‘bool seqan::parseGappedParams(RazerSOptions<TSpec>&, TFile&, ParamChooserOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (value(reader) == 'e')
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  938 |         bool atLeastOneFound = false;
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:   620 |         assignSeq(firstRead, multiFasta[0], format);                    // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note:       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 73%] Linking CXX executable ../../../bin/test_funcs_param_chooser
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../../bin/test_funcs_param_chooser 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 73%] Built target test_funcs_param_chooser
make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 73%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:57:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  845 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  862 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  896 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  934 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  968 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1009 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1046 |     public std::binary_function<TReadMatch, TReadMatch, int>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1087 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1130 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1174 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1218 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:127:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  127 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:83:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:264:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  264 |     public std::binary_function<
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:320:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  320 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:365:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  365 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:48:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1356 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1359 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1364 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1364 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1364 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSPrefix, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1367 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSPrefix, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1370 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSScore, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1312 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSScore, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1370 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSQuality<>, NMatchesNone_>; CharString = String<char, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1315 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSQuality<>, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1370 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  101 |     #define SEQAN_DO_PRAGMA(x) _Pragma(#x)
      |                                ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro ‘SEQAN_DO_PRAGMA’
  102 |     #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x)
      |                                 ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro ‘SEQAN_OMP_PRAGMA’
  697 |             SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align))
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1662 |         return _mapMatePairReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1463 |     initializeThreadLocalStoragesPaired(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  358 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  399 |         indexL.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  413 |         indexR.shape = shape;
      |         ~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  841 |         tls.shape = shape;
      |         ~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  868 |         index.shape = shape;
      |         ~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::end(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   850 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::end(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   832 |     return end(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   972 |         TSeqIter seqItEnd = end(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  777 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1087 |     _applyFilterOptions(filterPatternL, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<void>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   924 |                 pattern.finderLength = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                               ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2047 |     pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                                                ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = void]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<void> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<void> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>; THitString = String<SwiftHitSemiGlobal_<long long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<Hamming_>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   924 |                 pattern.finderLength = length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                               ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<Hamming_>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2047 |     pattern.finderLength = pattern.params.tabooLength + length(container(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                                                                ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, TFloat) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFloat = double; TSpec = Hamming_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2785 |         _patternInit(filterPattern, options.errorRate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  462 |         indexShape(host(pattern)) = pattern.shape;
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3026 |     _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::_patternInit(Pattern<TIndex, Swift<TSpec> >&, TFloat, TSize_) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFloat = double; TSize_ = int; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Swift<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSwiftSpec = Tag<SwiftSemiGlobal_<Hamming_> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2896 |     _patternInit(filterPattern, options.errorRate, 0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   878 |         _applyFilterOptions(filterPattern, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1014 |     initializeThreadLocalStoragesSingle(threadLocalStorages, store, splitters, shape, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  713 |         pattern.shape = indexShape(host(pattern));
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3221 |         return _mapSingleReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1208 |         return _mapSingleReadsParallel(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2979 |             matchVerify(verifier, infix(filterFinder), verifier.m.readId, readSet[verifier.m.readId], mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3054 |             _mapSingleReadsToContig(matches, store, contigId, filterPattern, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3146 |     return _mapSingleReads(store, cnts, options, mode, swiftIndex, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31:   required from ‘int seqan::_mapSingleReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3216 |         return _mapSingleReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesNone_]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20:   required from ‘void seqan::workVerification(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, Job<SingleVerification<TMatches, TFragmentStore, THitString, TOptions, TFilterPattern> >&, const String<unsigned int, Alloc<> >&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>; THitString = String<SwiftHitSemiGlobal_<long long int>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   302 |         matchVerify(tls.verifier, swiftInfix(value(it), contigSeq), absReadId, tls.globalStore->readSeqStore[absReadId], TRazerSMode());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33:   required from ‘void seqan::_mapSingleReadsParallelToContig(FragmentStore<TSpec, TConfig>&, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, const TContigId&, TCounts&, char, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Alloc<> >; TContigId = unsigned int; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   757 |                 workVerification(tls, job, splitters);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1039 |             _mapSingleReadsParallelToContig(store, threadLocalStorages, splitters, contigId, cnts, 'F', options, shape, mode, TFilterSpec());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39:   required from ‘int seqan::_mapSingleReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1203 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2155 |     TGenomeInfix origInf(inf);
      |                  ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2238 |                     TReadRev            readRev(readPrefix);
      |                                         ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2239 |                     TGenomeInfixRev     infRev(inf);
      |                                         ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2341 |             TReadRev            readRev(readPrefix);
      |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 2342 |             TGenomeInfixRev     infRev(inf);
      |                                 ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<char, Alloc<> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<char, Alloc<> >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50:   required from ‘void seqan::_writeAlignments(TFile&, FragmentStore<TSpec, TConfig>&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag<Sam_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1013 |                 for (TReadNameIterator it = begin(store.readNameStore[readId]); it != end(store.readNameStore[readId]); ++it) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                             ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1224 |                 _writeAlignments(file, store, Sam(), FunctorGlobalEditDistAlign());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of ‘seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > > seqan::operator+(const Iter<TGaps_, GapsIterator<AnchorGaps<TGapAnchors> > >&, TDifference) [with TGaps = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TDifference = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TExpand> >::Type seqan::iter(T&, TPos, Tag<TExpand>) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; TTag = Rooted_; typename Iterator<T, const Tag<TExpand> >::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1189 |     return begin(me, tag_) + pos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16:   required from ‘typename seqan::Iterator<T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::iter(T&, TPos) [with T = Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >; TPos = int; typename Iterator<T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Gaps<String<SimpleType<unsigned char, Dna5Q_> >, AnchorGaps<String<GapAnchor<int>, Alloc<> > > >, GapsIterator<AnchorGaps<String<GapAnchor<int>, Alloc<> > > > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1169 |     return iter(me, pos, typename DefaultGetIteratorSpec<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20:   required from ‘void seqan::insertGaps(Gaps<TSequence, AnchorGaps<TGapAnchors> >&, TPosition, TCount) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TGapAnchors = String<GapAnchor<int>, Alloc<> >; TPosition = int; TCount = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   465 |     TIter it = iter(gaps, clippedViewPos);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15:   required from ‘void seqan::insertGap(Gaps<TSequence, TSpec>&, TPosition) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = AnchorGaps<String<GapAnchor<int>, Alloc<> > >; TPosition = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   628 |     insertGaps(gaps, clippedViewPos, 1u);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18:   required from ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TScore = Score<int, Tag<Simple_> >; TShrinkMatches = True]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2582 |                                                                 insertGap(gaps, insPos - rBegin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1231:40:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1231 |         convertMatchesToGlobalAlignment(store, scoreType, True());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  742 |     Iter<TGaps, GapsIterator<AnchorGaps<TGapAnchors> > > result = lhs;
      |                                                          ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared ‘constexpr seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >::Iter(const seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >&)’ is deprecated [-Wdeprecated-copy]
  744 |     return result;
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because ‘seqan::Iter<seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >, seqan::GapsIterator<seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > > >’ has user-provided ‘const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >& seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >::operator=(const seqan::Iter<TGaps_, seqan::GapsIterator<seqan::AnchorGaps<TGapAnchors> > >&) [with TGaps_ = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String<seqan::GapAnchor<int>, seqan::Alloc<> >]’
  117 |         Iter const & operator = (Iter const & other_)
      |                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17:   required from ‘typename seqan::Iterator<const T, typename seqan::DefaultGetIteratorSpec<T>::Type>::Type seqan::begin(const T&) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<const T, typename DefaultGetIteratorSpec<T>::Type>::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; typename DefaultGetIteratorSpec<T>::Type = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   600 |     return begin(me, typename DefaultGetIteratorSpec<T>::Type()) ;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31:   required from ‘int seqan::write(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = std::basic_ofstream<char>; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   971 |         TSeqIter seqIt = begin(value(fragStore.readSeqStore, idCount));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode<RazerSLocal, RazerSGapped, RazerSErrors, NMatchesNone_>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1232 |         write(file, store, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1309 |         return dumpMatches(store, stats, readFName, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31:   required from ‘int seqan::dumpMatches(FragmentStore<TSpec, TConfig>&, TCounts&, CharString, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:  1353 |             return dumpMatches(store, stats, readFName, options, RazerSMode<RazerSLocal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   258 |         dumpMatches(store, stats, readFileNames[0], options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |     assignSeq(firstRead, multiFasta[0], format);            // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:193:23:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   193 |                 resize(seq[j], options.trimLength);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   186 |         if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::begin(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   616 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32:   required from ‘seqan::Finder<THaystack, seqan::Swift<TSpec> >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   375 |             data_iterator(begin(haystack, Rooted())),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:679:20:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   679 |     TFilterFinderR filterFinderR(genomeInf, options.repeatLength, 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3247 |         return _mapMatePairReads(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  532 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<void>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   887 |                 finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                        ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   930 |                 if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = long unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:896:43:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   896 |         finder.haystackEnd = begin(host(finder)) + (finder.endPos - length(pattern.shape) + 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   930 |                 if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> > seqan::operator+(const Iter<TContainer, AdaptorIterator<TIterator, TSpec> >&, TIntegral) [with TContainer = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIterator = SimpleType<unsigned char, Dna5Q_>*; TSpec = Tag<Default_>; TIntegral = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:865:45:   required from ‘bool seqan::_nextNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |         hostIterator(finder) = begin(host(finder)) + finder.startPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:961:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   961 |                         if (!_nextNonRepeatRange(finder, pattern))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<void>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  609 |     return Iter<TContainer, AdaptorIterator<TIterator, TSpec> >(container(left), hostIterator(left) + right);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2054 |     if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Pigeonhole<Hamming_>; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   887 |                 finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                        ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28:   required from ‘bool seqan::find(Finder<THaystack, Pigeonhole<TPigeonholeSpec> >&, Pattern<TIndex, Pigeonhole<TPigeonholeSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Hamming_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   930 |                 if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TFilterSpec = Pigeonhole<Hamming_>; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   695 |     while (find(filterFinderR, filterPatternR, options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole<Hamming_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1114 |             _mapMatePairReads(matches, store, contigId, filterPatternL, filterPatternR, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33:   required from ‘int seqan::_mapMatePairReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3252 |         return _mapMatePairReads(store, cnts, options, Shape<Dna, OneGappedShape>(), mode, Pigeonhole<TPigeonholeSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::host(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36:   required from ‘bool seqan::_firstNonRepeatRange(TFinder&, Pattern<TIndex, Swift<TSwiftSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1813 |         finder.endPos = length(host(finder));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30:   required from ‘bool seqan::windowFindBegin(Finder<THaystack, Swift<TSwiftSpec> >&, Pattern<TIndex, Swift<TSwiftSpec> >&, double) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Tag<SwiftSemiGlobal_<Hamming_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2054 |     if (!_firstNonRepeatRange(finder, pattern)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |          ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29:   required from ‘void seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, unsigned int, TThreadLocalStorages&, const String<unsigned int, Alloc<> >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1200 |         if (!windowFindBegin(filterFinderR, filterPatternR, tls.options.errorRate))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<Hamming_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1489 |             _mapMatePairReadsParallel(store, contigId, threadLocalStorages, splitters, cnts, 'F', options, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41:   required from ‘int seqan::_mapMatePairReadsParallel(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const RazerSMode<TAlignMode, TGapMode, TScoreMode, TMatchNPolicy>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1657 |         return _mapMatePairReadsParallel(store, cnts, options, shape, mode, Swift<TSwiftSpec>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  778 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   206 |         appendMatePair(store, seq[0], seq[1], seqId[0], seqId[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   186 |         if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24:   required from ‘void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   398 |             appendValue(indexText(indexL), readSetL[j]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |             appendValue(indexText(index), store.readSeqStore[j]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
 1475 |             typename Value<T>::Type temp_copy(_value); //temp copy because resize could invalidate _value
      |                                     ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, ErrorAlphabet_>; TValueTarget = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TSize = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2153 |     return resize(me, new_length, val, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   484 |                 resize(pattern, span, (ErrorAlphabet)SEQAN_MATCH);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   838 |             if (!chooseParams(options, pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig<MyFragStoreConfig>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TMatePairStore = String<MatePairStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1657 |         appendValue(me.readSeqStore, read1, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   206 |         appendMatePair(store, seq[0], seq[1], seqId[0], seqId[1]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   186 |         if (!loadReads(store, toCString(readFileNames[0]), toCString(readFileNames[1]), options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   653 |     TReadSet & readSetL = host(host(filterPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_endDefault(T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; typename Iterator<T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23:   required from ‘typename seqan::Iterator<T, const seqan::Tag<TSpec> >::Type seqan::end(T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = Rooted_; typename Iterator<T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   841 |     return _endDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |            ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24:   required from ‘typename seqan::Iterator<seqan::ModifiedString<THost, seqan::Tag<seqan::ModReverse_> >, const seqan::Tag<TSpec> >::Type seqan::begin(ModifiedString<THost, Tag<ModReverse_> >&, Tag<TSpec>) [with THost = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator<ModifiedString<THost, Tag<ModReverse_> >, const Tag<TSpec> >::Type = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   463 |     TIterator temp_(end(host(me), Rooted()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                     ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24:   required from ‘seqan::Finder<THaystack, TSpec>::Finder(THaystack&) [with THaystack = seqan::ModifiedString<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Tag<seqan::ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   440 |                 : data_iterator(begin(haystack, Rooted()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                 ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2241:41:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2241 |                     TMyersFinderRev     myersFinderRev(infRev);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                         ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   792 |                         if (matchVerify(verifierL, infix(genome, ((*it).i2.beginPos >= 0) ? (TSignedGPos)(*it).i2.beginPos : (TSignedGPos)0, (TSignedGPos)(*it).i2.endPos),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     793 |                                         leftReadId, readSetL[matePairId], mode))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  768 |     return TIterator(me, end(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2795 |                 std::cout << "  stepsize: " << getStepSize(host(filterPattern)) << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                            ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   858 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   858 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36:   required from ‘void seqan::_mapMatePairReads(TMatches&, FragmentStore<TSpec, TConfig>&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TReadIndex = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   653 |     TReadSet & readSetL = host(host(filterPatternL));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30:   required from ‘void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String<ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TSplitters = String<unsigned int, Alloc<> >; TShape = const Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   858 |         TIndex & index = host(tls.filterPattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                          ~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   838 |             if (!chooseParams(options, pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of ‘typename seqan::Parameter_<T>::Type seqan::container(Finder<THaystack, TSpec>&) [with THaystack = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = void; typename Parameter_<T>::Type = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1105:63:   required from ‘bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_<TNeedle, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1105 |         typename Size<TFinder>::Type const columns = length(container(finder)) + state.leftClip;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                             ~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1297:44:   required from ‘bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1297 |         return _patternInitSmallStateBanded(finder, needle, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1654:18:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1654 |                 if (!_stateInit(finder, needle, state))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                      ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, void>; TNeedle = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TNeedle2 = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TSpec = AlignTextBanded<FindInfix, NMatchesAll_, NMatchesAll_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1766 |         return find(finder, needle, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2177:16:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2177 |     while (find(myersFinder, readPrefix, state, minScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  793 |         return container(hostIterator(me));
      |                                          ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of ‘typename seqan::Container<seqan::ModifiedIterator<THost, TSpec> >::Type seqan::container(ModifiedIterator<THost, TSpec>&) [with THost = Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >; TSpec = Tag<ModReverse_>; typename Container<ModifiedIterator<THost, TSpec> >::Type = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_interface.h:752:24:   required from ‘void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator<Iter<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5Q_>*, Tag<Default_> > >, Tag<ModReverse_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   752 |     goEnd(it, container(it));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:948:7:   required from ‘void seqan::goEnd(Finder<THaystack, TSpec>&) [with THaystack = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   948 |         goEnd(hostIterator(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1656:18:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<AlignTextBanded<TSpec, TFinderCSP, TPatternCSP>, True, TFindBeginPatternSpec> >&) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = FindPrefix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1656 |             goEnd(finder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13:   required from ‘bool seqan::find(TFinder&, const TNeedle&, PatternState_<TNeedle2, Myers<TSpec, True, TFindBeginPatternSpec> >&, int) [with TFinder = Finder<ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >, void>; TNeedle = ModifiedString<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TNeedle2 = ModifiedString<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Tag<ModReverse_> >; TSpec = AlignTextBanded<FindPrefix, NMatchesAll_, NMatchesAll_>; TFindBeginPatternSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1766 |         return find(finder, needle, state);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2245:32:   required from ‘bool seqan::matchVerify(TMatchVerifier&, Segment<TGenome, InfixSegment>, unsigned int, const TRead&, const RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, TMatchNPolicy>&) [with TMatchVerifier = MatchVerifier<FragmentStore<MyFragStoreConfig>, String<MatchRecord<unsigned int>, Alloc<> >, RazerSOptions<>, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, String<String<short unsigned int> > >; TGenome = String<SimpleType<unsigned char, Dna5Q_> >; TRead = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2245 |                     while (find(myersFinderRev, readRev, verifier.revPatternState, maxScore))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3340 |             return _mapMatePairReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  294 |     TContainer cont(container(host(me)));
      |                ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   initializing argument 1 of ‘seqan::ModifiedString<THost, TSpec>::ModifiedString(typename seqan::Parameter_<TContainer>::Type) [with THost = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TSpec = seqan::Tag<seqan::ModReverse_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’
  139 |     ModifiedString(typename Parameter_<THost>::Type host) : _host(_toPointer(host))
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  2948 |     TReadSet & readSet = indexText(host(filterPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSpec = Pigeonhole<void>; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64:   required from ‘void seqan::_applyFilterOptions(Pattern<TIndex, Pigeonhole<TSpec> >&, const TOptions&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  2795 |                 std::cout << "  stepsize: " << getStepSize(host(filterPattern)) << std::endl;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                                                            ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>*; TParam = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>*; TParam = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TString2 = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >; TValue = Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14:   required from ‘typename seqan::Host<seqan::Pattern<TNeedle, TSpec> >::Type& seqan::host(Pattern<TNeedle, TSpec>&) [with TNeedle = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; typename Host<Pattern<TNeedle, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   368 |         return value(me.data_host);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40:   required from ‘void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern<TReadIndex, TFilterSpec>&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TReadIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TFilterSpec = Swift<Tag<SwiftSemiGlobal_<void> > >; TCounts = String<String<short unsigned int> >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  2948 |     TReadSet & readSet = indexText(host(filterPattern));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                    ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3343 |         return _mapSingleReads(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 |         class Index<TObject, IndexQGram<TShapeSpec, OpenAddressing> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >&)’ first required here
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  497 |     class Pattern<TIndex, Swift<TSpec> >
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method ‘seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >& seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >::operator=(const seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >&)’ first required here
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >; TShape = Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>’ has user-provided ‘seqan::Shape<TValue, seqan::OneGappedShape>::Shape(const seqan::Shape<TValue, seqan::OneGappedShape>&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  135 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   required from ‘bool seqan::processRead(PairedMatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   160 |     FilterPatternLSetMaxErrorsWrapper<TCallback> wrapperL(value(filter.callback));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                                           ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >&, String<TString*>&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinderL = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterFinderR = Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   962 |         disabled += processRead(*tls.matchFilter, it->readId / 2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20:   required from ‘bool seqan::processRead(MatchFilter<TOptionsSpec, TReadSeqSet, TCallback>&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet<String<SimpleType<unsigned char, Dna5Q_> >, Owner<ConcatDirect<void> > >; TCallback = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   251 |     limitRead(value(filter.callback), readId, newLimit - 1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36:   required from ‘void seqan::writeBackToLocal(ThreadLocalStorage<MapSingleReads<TMatches_, TFragmentStore, TFilterFinder_, TFilterPattern_, TShape, TOptions, TCounts, TRazerSMode> >&, String<SingleVerificationResult<TMatches> >&, bool) [with TMatches = String<MatchRecord<unsigned int>, Alloc<> >; TFragmentStore = FragmentStore<MyFragStoreConfig>; TFilterFinder = Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TFilterPattern = Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TOptions = RazerSOptions<>; TCounts = String<String<short unsigned int> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   472 |             disabled += processRead(*tls.matchFilter, it->readId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >& seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::operator=(const seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&)’ is deprecated [-Wdeprecated-copy]
  116 | class ThreadLocalStorage<
      |       ^~~~~~~~~~~~~~~~~~~
  117 |     MapSingleReads<
      |     ~~~~~~~~~~~~~~~
  118 |         TMatches_,
      |         ~~~~~~~~~~
  119 |         TFragmentStore,
      |         ~~~~~~~~~~~~~~~
  120 |         TFilterFinder_,
      |         ~~~~~~~~~~~~~~~
  121 |         TFilterPattern_,
      |         ~~~~~~~~~~~~~~~~
  122 |         TShape,
      |         ~~~~~~~
  123 |         TOptions,
      |         ~~~~~~~~~
  124 |         TCounts,
      |         ~~~~~~~~
  125 |         TRazerSMode> >
      |         ~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because ‘seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >’ has user-provided ‘seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >::Shape(const seqan::Shape<TValue, seqan::GappedShape<seqan::Tag<seqan::Default_> > >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]’
  330 |                 Shape(Shape const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >& seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::operator=(const seqan::ThreadLocalStorage<seqan::MapSingleReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, ErrorAlphabet_>*; TSource1 = SimpleType<unsigned char, ErrorAlphabet_>*; TSource2 = SimpleType<unsigned char, ErrorAlphabet_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, ErrorAlphabet_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from ‘void seqan::insertValue(T&, TPosition, const TValue&) [with T = String<SimpleType<unsigned char, ErrorAlphabet_> >; TPosition = int; TValue = SimpleType<unsigned char, ErrorAlphabet_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1845 |     insertValue(me, pos, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from ‘void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String<SensitivityDPState_<Tag<HammingDistance_>, double>, Alloc<> >; TShape = String<char, Alloc<> >; TLogErrorDistr = String<double>; TDistance = Tag<HammingDistance_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   511 |                                 insertValue(pattern, mods[i].i1, (ErrorAlphabet)SEQAN_INSERT);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                                 ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from ‘void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String<double>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag<HammingDistance_>; TErrorDist = String<double>; ThreshExact = const Tag<ThreshExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1118 |         initPatterns(states, bitString, errors, logErrorDistribution, dist, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from ‘void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String<double>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   741 |                 qgramFilteringSensitivity(sensMat, shape, totalN, maxErrors - 1, maxT - 1, HammingDistance(), ThreshExact(), logErrorDistribution);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from ‘bool seqan::chooseParams(RazerSOptions<TSpec>&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:  1310 |         makeSelectedStatsFile(errorDistribution, pm_options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:   838 |             if (!chooseParams(options, pm_options))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note:       |                  ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3431 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesAll_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<void> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<void> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<void> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3443 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<void> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSGapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<Hamming_> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<Hamming_> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<Hamming_> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Pigeonhole<seqan::Hamming_> >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of ‘static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >*; TParam = seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28:   required from ‘void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >*; TParam = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   363 |     TConstructor::construct(it, param_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19:   required from ‘typename seqan::Value<TIterator>::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder<ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >, Tag<Tristate_> >; TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Value<TIterator>::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   606 |     valueConstruct(ret, data);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |     ~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<Hamming_> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_> > >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSUngapped, RazerSErrors, NMatchesNone_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3452 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSUngapped, Nothing, NMatchesNone_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
   84 | class ThreadLocalStorage<MapPairedReads<TMatches_, TFragmentStore, TFilterFinderL_, TFilterFinderR_, TFilterPattern_, TShape_, TOptions, TCounts, TRazerSMode> >
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method ‘seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >::ThreadLocalStorage(const seqan::ThreadLocalStorage<seqan::MapPairedReads<seqan::String<seqan::MatchRecord<unsigned int>, seqan::Alloc<> >, seqan::FragmentStore<MyFragStoreConfig>, seqan::Finder<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Finder<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Pattern<seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> > > >, seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::RazerSOptions<>, seqan::String<seqan::String<short unsigned int> >, seqan::RazerSMode<seqan::RazerSGlobal, seqan::RazerSUngapped, seqan::RazerSErrors, seqan::NMatchesNone_> > >&)’ first required here
  296 |         new( (void*) & value(it) ) TNonConstValue(param_);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Pigeonhole<void> >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   277 |         class Pattern<TIndex, Pigeonhole<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Pigeonhole<void> >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, Tag<OpenAddressing_> > >, Pigeonhole<void> >, Shape<SimpleType<unsigned char, Dna_>, OneGappedShape>, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, UngappedShape<0> >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3376 |         return _mapReads(store, cnts, options, ungapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::OneGappedShape>]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapPairedReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Finder<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3351 |             return _mapMatePairReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                    ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >; TSource = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11:   required from ‘void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TSource = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   497 |     class Pattern<TIndex, Swift<TSpec> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >; TValue2 = ThreadLocalStorage<MapSingleReads<String<MatchRecord<unsigned int>, Alloc<> >, FragmentStore<MyFragStoreConfig>, Finder<String<SimpleType<unsigned char, Dna5Q_> >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Pattern<Index<StringSet<const Segment<String<SimpleType<unsigned char, Dna5Q_> >, InfixSegment>, Owner<> >, IndexQGram<Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, Tag<OpenAddressing_> > >, Swift<Tag<SwiftSemiGlobal_<void> > > >, Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >, RazerSOptions<>, String<String<short unsigned int> >, RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TShape = Shape<SimpleType<unsigned char, Dna_>, GappedShape<Tag<Default_> > >; TRazerSMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3354 |         return _mapSingleReadsParallel(store, cnts, options, shape, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode<RazerSGlobal, RazerSGapped, RazerSErrors, NMatchesAll_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3381 |         return _mapReads(store, cnts, options, gapped, mode);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&, RazerSMode<TAlignMode, TGapMode, Nothing, TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3396 |         return _mapReads(store, cnts, options, RazerSMode<TAlignMode, TGapMode, RazerSErrors, TMatchNPolicy>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33:   required from ‘int seqan::_mapReads(FragmentStore<TSpec, TConfig>&, TCounts&, RazerSOptions<TSpec>&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig<MyFragStoreConfig>; TCounts = String<String<short unsigned int> >; TSpec = RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:  3422 |                 return _mapReads(store, cnts, options, RazerSMode<RazerSGlobal, RazerSGapped, Nothing, NMatchesAll_>());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26:   required from ‘int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   236 |     int error = _mapReads(store, stats, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:   865 |     int result = mapReads(genomeFileNames, readFileNames, options);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note:       |                  ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >& seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >::operator=(const seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because ‘seqan::Index<seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >, seqan::Tag<seqan::OpenAddressing_> > >’ has user-provided ‘seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >::Index(const seqan::Index<TObject, seqan::IndexQGram<TShapeSpec, seqan::Tag<seqan::OpenAddressing_> > >&) [with TObject = seqan::StringSet<const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >]’
  159 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/param_tabs.cpp
[ 75%] Linking CXX executable ../../../bin/razers3
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../../bin/razers3  -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Built target razers3
make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 76%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5Q_> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5Q_> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1302:14:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const StringSet<String<char, Alloc<> > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1302 |                                 assignSeq(store.contigStore[seqOfs + i].seq, multiSeqFile[i], contigFile.format);       // read Genome sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1323:20:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1323 |         return loadContigs(store, fileNames, loadSeqs);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1331:20:   required from ‘bool seqan::loadContigs(FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TFileNames = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1331 |         return loadContigs(store, fileNames, true);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:114:21:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   114 |     if (!loadContigs(store, getArgumentValue(parser, 0)) && (stop = true))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |          ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 77%] Linking CXX executable ../../../bin/razers3_simulate_reads
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../../bin/razers3_simulate_reads  -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Built target razers3_simulate_reads
make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 78%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/fstream:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:1:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  845 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  862 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  896 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  934 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  968 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1009 |     public std::binary_function<TReadMatch, TReadMatch, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1046 |     public std::binary_function<TReadMatch, TReadMatch, int>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1087 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1130 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1174 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1218 |     public std::binary_function<typename Value<TAlignedReadStore>::Type, typename Value<TAlignedReadStore>::Type, bool>
      |                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; typename Size<T>::Type = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:724:19:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/usr/include/c++/14/bits/stl_function.h:131:12: note:   724 |             resize(seq, options.trimLength);
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19:   required from here
/usr/include/c++/14/bits/stl_function.h:131:12: note:    39 |     if (!loadReads(store, toCString(getArgumentValue(parser, 0)), options) && (stop = true))
/usr/include/c++/14/bits/stl_function.h:131:12: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from ‘static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1887 |                 TSize new_capacity = reserve(me, new_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                      ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(String<TValue, TSpec>&, TSize, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1952 |     return _Resize_String<Tag<TExpand> >::resize_(me, new_length);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from ‘typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSize = int; typename Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2143 |     return resize(me, new_length, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from ‘void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFastaSeq = Segment<String<char, MMap<> >, InfixSegment>; Fastq = Tag<TagFastq_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   793 |                 resize(dst, itEnd - it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from ‘void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector<TTagList>&) [with TSeq = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFileSeq = Segment<String<char, MMap<> >, InfixSegment>; TTagList = TagList<Tag<TagFastq_>, TagList<Tag<TagFasta_>, TagList<Tag<TagRaw_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1423 |                         assignSeq(dst, seq, TFormatTag());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |     assignSeq(firstRead, multiFasta[0], format);            // read the first sequence
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1415 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1442 |         return appendRead(me, read, name, TReadStoreElement::INVALID_ID);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   727 |         appendRead(store, seq, seqId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    39 |     if (!loadReads(store, toCString(getArgumentValue(parser, 0)), options) && (stop = true))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1415 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >; CharString = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1442 |         return appendRead(me, read, name, TReadStoreElement::INVALID_ID);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19:   required from ‘bool seqan::loadReads(FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig<void>; TRazerSOptions = RazerSOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   727 |         appendRead(store, seq, seqId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    39 |     if (!loadReads(store, toCString(getArgumentValue(parser, 0)), options) && (stop = true))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 78%] Linking CXX executable ../../../bin/razers3_quality2prob
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../../bin/razers3_quality2prob  -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 78%] Built target razers3_quality2prob
make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 78%] Building CXX object extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = GraphCargo<Triple<char, unsigned int, unsigned int>, AlignedReadStoreElement<int, GapAnchor<int>, void>, unsigned int>; TSource = GraphCargo<Triple<char, unsigned int, unsigned int>, AlignedReadStoreElement<int, GapAnchor<int>, void>, unsigned int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1242:11:   required from ‘void seqan::assignValue(T&, TPos, const TValue&) [with T = String<GraphCargo<Triple<char, unsigned int, unsigned int>, AlignedReadStoreElement<int, GapAnchor<int>, void>, unsigned int>, Alloc<> >; TValue = GraphCargo<Triple<char, unsigned int, unsigned int>, AlignedReadStoreElement<int, GapAnchor<int>, void>, unsigned int>; TPos = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1242 |     assign(value(me, pos), _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_property.h:178:13:   required from ‘void seqan::assignProperty(TPropertyMap&, TDescriptor, TValue) [with TPropertyMap = String<GraphCargo<Triple<char, unsigned int, unsigned int>, AlignedReadStoreElement<int, GapAnchor<int>, void>, unsigned int>, Alloc<> >; TDescriptor = unsigned int; TValue = GraphCargo<Triple<char, unsigned int, unsigned int>, AlignedReadStoreElement<int, GapAnchor<int>, void>, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   178 |         assignValue(pm, _getId(d), val);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:191:23:   required from ‘GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>& registerRead(ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&, typename ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::TId) [with TColumnAlphabet = seqan::Triple<char, unsigned int, unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>; TPosition = unsigned int; typename ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::TId = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   191 |         assignProperty(me.vertexCargo, vd, new_cargo);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_construction.h:82:59:   required from ‘void construct(ReadGraph<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&, const seqan::String<seqan::Pair<TPosition, seqan::String<TString> > >&, const seqan::FragmentStore<TSpec, TConfig>&, TId) [with TColumnAlphabet = seqan::Triple<char, unsigned int, unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>; TPosition = unsigned int; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    82 |                     TGraphCargo & new_cargo = registerRead(me, _readId(value(colIter)));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                                               ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:212:14:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   212 |     construct(rgraph, candidates, fragStore, options.contig);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘GraphCargo<seqan::Triple<char, unsigned int, unsigned int>, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, unsigned int>& GraphCargo<seqan::Triple<char, unsigned int, unsigned int>, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, unsigned int>::operator=(const GraphCargo<seqan::Triple<char, unsigned int, unsigned int>, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph.h:32,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:34:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note: because ‘GraphCargo<seqan::Triple<char, unsigned int, unsigned int>, seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>, unsigned int>’ has user-provided ‘GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>::GraphCargo(const GraphCargo<TColumnAlphabet, TAlignedReadStoreElement, TPosition>&) [with TColumnAlphabet = seqan::Triple<char, unsigned int, unsigned int>; TAlignedReadStoreElement = seqan::AlignedReadStoreElement<int, seqan::GapAnchor<int>, void>; TPosition = unsigned int]’
   44 |     GraphCargo(GraphCargo const& other)
      |     ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:186:27:   required from ‘void parseContig(const seqan::FragmentStore<TSpec, TConfig>&, TId, seqan::String<TEmission>&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int; TAnnotatedCandidateColumn = seqan::Pair<unsigned int, seqan::String<seqan::Triple<char, unsigned int, unsigned int> > >; TScannerType = SimpleColumn]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:   186 |             String<Dna5Q> ungapped_seq = fragStore.readSeqStore[iter_cr->readId];
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |                           ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:   198 |     parseContig(fragStore, options.contig, candidates, algoSpec);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15:   required from ‘int seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |                                 appendRead(fragStore, seq, matePairId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   155 |     read(strmReads, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = SimpleType<unsigned char, Dna5Q_>; TTargetSpec = Alloc<>; TSource = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from ‘void seqan::appendValue(StringSet<TString, Owner<ConcatDirect<void> > >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = String<SimpleType<unsigned char, Dna5Q_> >; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   318 |     append(me.concat, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from ‘typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig<void>; TRead = String<SimpleType<unsigned char, Dna5Q_> >; TId = unsigned int; typename Size<typename FragmentStore<TSpec, TConfig>::TReadStore>::Type = unsigned int; typename FragmentStore<TSpec, TConfig>::TReadStore = String<ReadStoreElement<void>, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1396 |         appendValue(me.readSeqStore, read, Generous());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15:   required from ‘int seqan::read(TFile&, FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig<void>; Amos = const Tag<TagAmos_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   452 |                                 appendRead(fragStore, seq, matePairId);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   155 |     read(strmReads, fragStore, Amos());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Triple<char, unsigned int, unsigned int>; TSource = Triple<char, unsigned int, unsigned int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11:   required from ‘void seqan::move(TTarget&, TSource&) [with TTarget = Triple<char, unsigned int, unsigned int>; TSource = Triple<char, unsigned int, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   268 |     assign(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13:   required from ‘void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple<char, unsigned int, unsigned int>*; TSource1 = Triple<char, unsigned int, unsigned int>*; TSource2 = Triple<char, unsigned int, unsigned int>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1056 |         move(*target_begin, *source_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29:   required from ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple<char, unsigned int, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1600 |     _arrayMoveForwardDefault(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple<char, unsigned int, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple<char, unsigned int, unsigned int>*; TSource1 = Triple<char, unsigned int, unsigned int>*; TSource2 = Triple<char, unsigned int, unsigned int>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1211 |         arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = Triple<char, unsigned int, unsigned int>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from ‘static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::Triple<char, unsigned int, unsigned int> >; TSource = const seqan::Triple<char, unsigned int, unsigned int>; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1367 |             typename Size<TTarget>::Type part_length = _clearSpace(target, length(source), target_length, target_length, TExpand());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from ‘void seqan::append(String<TValue, TSpec>&, const TSource&, Tag<TUsage>) [with TTargetValue = Triple<char, unsigned int, unsigned int>; TTargetSpec = Alloc<>; TSource = Triple<char, unsigned int, unsigned int>; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1421 |     AppendString_<Tag<TExpand> >::append_(target, source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from ‘void seqan::append(TTarget&, const TSource&) [with TTarget = String<Triple<char, unsigned int, unsigned int> >; TSource = Triple<char, unsigned int, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1626 |     append(target, source, typename DefaultOverflowImplicit<TTarget>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:197:19:   required from ‘void parseContig(const seqan::FragmentStore<TSpec, TConfig>&, TId, seqan::String<TEmission>&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int; TAnnotatedCandidateColumn = seqan::Pair<unsigned int, seqan::String<seqan::Triple<char, unsigned int, unsigned int> > >; TScannerType = SimpleColumn]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   197 |             append(column, TAssignedReadChar(_sequenceCharacter(gapped_read[p - offset]), iter_cr->readId, _positionInRead(gapped_read[p - offset])));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |     parseContig(fragStore, options.contig, candidates, algoSpec);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘constexpr seqan::Triple<char, unsigned int, unsigned int>& seqan::Triple<char, unsigned int, unsigned int>::operator=(const seqan::Triple<char, unsigned int, unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because ‘seqan::Triple<char, unsigned int, unsigned int>’ has user-provided ‘seqan::Triple<T1, T2, T3, TSpec>::Triple(const seqan::Triple<T1, T2, T3, TSpec>&) [with T1 = char; T2 = unsigned int; T3 = unsigned int; TSpec = void]’
  162 |     inline Triple(Triple const & _p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 79%] Linking CXX executable ../../../bin/rep_sep
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../../bin/rep_sep  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Built target rep_sep
make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Building CXX object extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o -MF CMakeFiles/search.dir/search.cpp.o.d -o CMakeFiles/search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:53:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   321 |     prepare(searcher, query);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   321 |     prepare(searcher, query);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   447 |     prepare(searcher, queryLong);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = seqan::Tag<Query_>; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   447 |     prepare(searcher, queryLong);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<unsigned int>& seqan::VertexEsa<unsigned int>::operator=(const seqan::VertexEsa<unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   280 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   403 |     index(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   530 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   530 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, Tag<Query_>, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >, Tag<Search_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<Query_>; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   802 |             dbFinder.verifier(dbId, queryId, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   530 |             return runSearcher(options, TDbGeo(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   249 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   249 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >; TValue2 = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Tag<Query_> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:797:45:   required from ‘void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   797 |     TDbQuerySSize dbQuerySize = length(value(dbFinder.query).text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   506 |             return runSearcher(options, TDbDna(), Nothing(), Online(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   520 |                     return runSearcher(options, TDbDna(), TDbDnaSaSmall(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                     return runSearcher(options, TDbGeo(), TDbGeoSaHuge(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   454 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |                     return runSearcher(options, TDbGeo(), TDbGeoSaSmall(), Parallel(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from ‘int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   328 |     execute(searcher);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   513 |                     return runSearcher(options, TDbDna(), TDbDnaSaHuge(), Parallel(), Nothing());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Building CXX object extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o -MF CMakeFiles/join.dir/join.cpp.o.d -o CMakeFiles/join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:53:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:   316 |                     return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   328 |                     return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   350 |                     return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<HugeDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   362 |                     return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   336 |     build(dbFinder.dbIndex, dbFinder.db, Default());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  780 |     dbIndex.index = TIndex(db.text);
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of ‘void buildQuery(DbIndex<seqan::Index<TText, seqan::IndexSa<TSpec> >, seqan::Tag<Query_> >&, Db<TText, TDbSpec>&, TSeedLength) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>; TDbSpec = void; TSeedLength = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15:   required from ‘void prepare(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, TSpec>&, Db<TText, TDbSpec>&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |     buildQuery(dbFinder.queryIndex, value(dbFinder.query), dbFinder.minSeedLength);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   277 |     prepare(joiner, db);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >& seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >::operator=(const seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >&)’ is deprecated [-Wdeprecated-copy]
  902 |         dbIndex.index[seedSet] = TIndex(db.text);
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because ‘seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >’ has user-provided ‘seqan::Index<TText, seqan::IndexSa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<SmallDb_>]’
   86 |     Index(Index const & other) :
      |     ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:   316 |                     return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared ‘constexpr seqan::VertexEsa<unsigned int>& seqan::VertexEsa<unsigned int>::operator=(const seqan::VertexEsa<unsigned int>&)’ is deprecated [-Wdeprecated-copy]
  103 | struct VertexSA : public VertexEsa<TSize>
      |        ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because ‘seqan::VertexEsa<unsigned int>’ has user-provided ‘seqan::VertexEsa<TSize>::VertexEsa(const seqan::VertexEsa<TSize>&) [with TSize = unsigned int]’
  290 |                 VertexEsa(VertexEsa const &other):
      |                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ first required here
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<SimpleType<unsigned char, Dna5_>, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:   328 |                     return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   350 |                     return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of ‘void seqan::_qgramFillSuffixArray(TSA&, const StringSet<TSequence, TSpec>&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TShape = Shape<char, UngappedShape<0> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24:   required from ‘void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TDir = String<unsigned int, Alloc<> >; TBucketMap = Nothing; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TShape = Shape<char, UngappedShape<0> >; TStepSize = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1639 |                 _qgramFillSuffixArray(sa, text, shape, dir, bucketMap, stepSize, False());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21:   required from ‘void build(DbIndex<seqan::Index<TObject, TSpec>, TDbIndexSpec>&, Db<TText, TDbSpec>&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   804 |     createQGramIndex(sa, dir, nothing, text, shape, stepSize);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10:   required from ‘void index(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::TagExact_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   347 |     build(dbFinder.dbIndex, dbFinder.db, seqan::Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::TagExact_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   262 |     index(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   362 |                     return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Exact());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1448 |                                         if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                               // if bucket is enabled
      |                                                                      ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1450 |                                         sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;                    // first hash
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1458 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1460 |                                                 sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos;        // next hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1480 |                                                 if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos;                                       // if bucket is enabled
      |                                                                              ~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1482 |                                                 sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos;            // hash
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_historyClear(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   292 |     _historyClear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2147 |         it._parentDesc = value(it);
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘bool seqan::_moveIteratorsRight(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<Tag<HammingDistance_>, TSpec> >&, const StageExact_&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TSpec = Tag<Top_>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28:   required from ‘bool seqan::_nextState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   587 |     if (_moveIteratorsRight(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageExact_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1277 |                     while (_nextState(finder, TStage()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1254 |         _find(finder, delegate, StageExact_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  244 |         class Iter< TIndex, VSTree< TopDown<TSpec> > >
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method ‘seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >& seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >::operator=(const seqan::Iter<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >, seqan::VSTree<seqan::TopDown<> > >&)’ first required here
  651 |         back(finder.textStack) = finder.textStack[length(finder.textStack) - 2];
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(const seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >&) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:   343 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  147 |             : data_container(other_.data_container),
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of ‘void seqan::_clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9:   required from ‘void seqan::clear(Iter<TIndex, VSTree<TSpec> >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2751 |                 _clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                 ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10:   required from ‘void seqan::goRoot(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = TopDown<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   293 |     clear(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   266 |                         goRoot(*this);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                         ~~~~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
 2745 |                 value(it) = typename VertexDescriptor<TIndex>::Type(MinimalCtor());
      |                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   343 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  541 |     return TIterator(me, begin(me, Standard()));
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   initializing argument 1 of ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
  138 |     Iter(typename Parameter_<TContainer>::Type container_, TIterator it_)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >& seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >::operator=(const seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, seqan::SimpleType<unsigned char, seqan::Dna5_> >’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<HugeDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<HugeDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<HugeDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Preorder; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Preorder]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of ‘void seqan::_historyPush(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>]’:
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17:   required from ‘bool seqan::_goDown(Iter<Index<TText, IndexSa<TSpec> >, VSTree<TopDown<TSpec> > >&, VSTreeIteratorTraits<TDfsOrder, True>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>; TSpec = Truncated<Preorder>; TDfsOrder = Preorder_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   360 |     _historyPush(it);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14:   required from ‘bool seqan::goDown(Iter<TIndex, VSTree<TopDown<TSpec> > >&) [with TIndex = Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >; TSpec = Truncated<Preorder>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  2296 |                 if (_goDown(it, typename GetVSTreeIteratorTraits< Iter<TIndex, VSTree< TopDown<TSpec> > > >::Type())) {
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52:   required from ‘bool seqan::_moveIteratorsDown(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   527 |     return goDown(back(finder.textStack)) && goDown(back(finder.patternStack));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27:   required from ‘bool seqan::_pushState(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   432 |     if (_moveIteratorsDown(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31:   required from ‘void seqan::_find(Finder2<Index<TObject, TSpec>, Index<TPattern, TPatternIndexSpec>, Backtracking<TDistance, TSpec> >&, TDelegate&, const TStage&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TTextIndexSpec = IndexSa<Tag<SmallDb_> >; TPattern = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TPatternIndexSpec = IndexSa<Tag<SmallDb_> >; TDistance = Tag<HammingDistance_>; TSpec = Tag<Top_>; TStage = StageInitial_; TDelegate = DbFinder<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, Index<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, IndexSa<Tag<SmallDb_> > >, void, Writer<Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Db<StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>, Tag<Join_> >, Tag<Parallel_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1271 |                 if (_pushState(finder, TStage()))
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   603 |         _find(finderExt, dbFinder, StageInitial_());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared ‘constexpr seqan::VertexSA<unsigned int, char>& seqan::VertexSA<unsigned int, char>::operator=(const seqan::VertexSA<unsigned int, char>&)’ is deprecated [-Wdeprecated-copy]
  619 |     it._parentDesc = value(it);
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because ‘seqan::VertexSA<unsigned int, char>’ has user-provided ‘seqan::VertexSA<TSize, TAlphabet>::VertexSA(const seqan::VertexSA<TSize, TAlphabet>&) [with TSize = unsigned int; TAlphabet = char]’
  122 |     VertexSA(VertexSA const & other) :
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<SimpleType<unsigned char, Dna5_>*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of ‘typename seqan::Pointer_<seqan::Segment<THost, TSpec> >::Type seqan::_toPointer(Segment<THost, TSpec>&) [with THost = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = InfixSegment; typename Pointer_<Segment<THost, TSpec> >::Type = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40:   required from ‘seqan::Iter<TContainer, seqan::AdaptorIterator<TIterator, TSpec> >::Iter(typename seqan::Parameter_<TContainer>::Type, TIterator) [with TContainer = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag<seqan::Default_>; typename seqan::Parameter_<TContainer>::Type = seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   139 |             : data_container(_toPointer(container_)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                              ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<seqan::Rooted_> >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; typename Iterator<const T, const Tag<Rooted_> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >; Rooted = const Tag<Rooted_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   541 |     return TIterator(me, begin(me, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25:   required from ‘typename seqan::Iterator<const T, const seqan::Tag<TSpec> >::Type seqan::begin(const T&, Tag<TSpec>) [with T = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSpec = Rooted_; typename Iterator<const T, const Tag<TSpec> >::Type = Iter<Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>, AdaptorIterator<char*, Tag<Default_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   624 |     return _beginDefault(me, tag_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |            ~~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63:   required from ‘unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>; TSeq2 = Segment<String<char, Alloc<Tag<StringOfMaxSize256_> > >, InfixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:  1634 |         typename Iterator<TSeq1 const, Rooted>::Type seq1Iter = begin(seq1, Rooted());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                                                 ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52:   required from ‘bool _verify(Verifier<TText, TSpec>&, typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   136 |         TErrors errors = _computeEditDistanceBanded(text1, text2, maxErrors);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23:   required from ‘bool Verifier<TText, TSpec>::operator()(typename seqan::Size<Db<TText> >::Type, typename seqan::Size<Db<TText, TSpec> >::Type, TDelegate&) [with TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >; TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; typename seqan::Size<Db<TText> >::Type = unsigned int; typename seqan::Size<Db<TText, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:    78 |         return _verify(*this, dbId, queryId, delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   783 |             dbFinder.verifier(dbId1, dbId2, dbFinder.delegate);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   343 |             return runJoiner(options, TDbGeo(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared ‘constexpr seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>::Segment(const seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>&)’ is deprecated [-Wdeprecated-copy]
  470 |     return me;
      |            ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because ‘seqan::Segment<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::InfixSegment>’ has user-provided ‘seqan::Segment<THost_, seqan::InfixSegment>& seqan::Segment<THost_, seqan::InfixSegment>::operator=(const seqan::Segment<THost_, seqan::InfixSegment>&) [with THost_ = seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >]’
  197 |     operator = (Segment const & source)
      |     ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   231 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, Tag<Pack_> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TString = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Alloc<> >; TSequence = String<char, Alloc<Tag<StringOfMaxSize256_> > >; TSetSpec = Owner<ConcatDirect<void> >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5_>*; TSource1 = SimpleType<unsigned char, Dna5_>*; TSource2 = SimpleType<unsigned char, Dna5_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   856 |             arrayClearSpace(seq_array + start, old_length - start, removed_size, size);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TValue = String<char, Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from ‘bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   461 |     appendValue(parser.db.text, parser._text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from ‘bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   394 |     return _parseId(parser, reader) && _parseText(parser, reader);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                        ~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from ‘bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   534 |         if (!parseLine(parser, reader))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   231 |     if (!load(db, options.databaseFile))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |          ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<Tag<StringOfMaxSize256_> >; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>; TValue2 = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   735 |     me.data_value = _holderAllocateObject(me, value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Db<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >, void>&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:778:40:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   778 |     TDbSSize dbQuerySize = length(value(dbFinder.query).text);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                   ~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   309 |             return runJoiner(options, TDbDna(), Nothing(), Online());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: ‘struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ declared here
   97 | struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned char, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned char]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned char, BitPacked<24, 8> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned char, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned char, BitPacked<24, 8> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >& seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >::operator=(const seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because ‘seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >::Pair(const seqan::Pair<T1, T2, seqan::BitPacked<BITSIZE1, BITSIZE2> >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]’
  112 |     inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {}
      |            ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   332 |                         return runJoiner(options, TDbDna(), TDbDnaSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   354 |                         return runJoiner(options, TDbGeo(), TDbGeoSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<SmallDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<SmallDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   366 |                         return runJoiner(options, TDbGeo(), TDbGeoSaSmall(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21:   required from ‘bool seqan::MergeStreamComparer<TValue, Compare>::operator()(const seqan::PageBucket<TValue>&, const seqan::PageBucket<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; Compare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    50 |             return C(static_cast<const TValue&>(*(a.cur)),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      51 |                      static_cast<const TValue&>(*(b.cur))) > 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13:   required from ‘void seqan::_adjustHeapTowardLeaves(PriorityType<TValue, TLess, PriorityHeap>&, TValue, TSize, TSize) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >; TSize = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   356 |                 if ( less ( element, me.heap[i] ) )
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                      ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26:   required from ‘void seqan::pop(PriorityType<TValue, TLess, PriorityHeap>&) [with TValue = PageBucketExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> > >; TLess = MergeStreamComparer<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, _skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   335 |                 _adjustHeapTowardLeaves(me, element, 0, 2 );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18:   required from ‘void seqan::Handler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadSorterSpec_> >::pop() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TPoolSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   311 |                                         ::seqan::pop(pqueue);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24:   [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TSpec = IndexSa<Tag<HugeDb_> >; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from ‘void seqan::_indexRequireTopDownIteration(Index<TText, IndexSa<TSpec> >&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Owner<ConcatDirect<void> > >; TIndexSpec = Tag<HugeDb_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   177 |     indexRequire(index, EsaSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from ‘seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   265 |                         _indexRequireTopDownIteration(_index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from ‘void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   597 |         TTextIterator textIt(dbFinder.dbIndex.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from ‘int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |     execute(joiner);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   320 |                         return runJoiner(options, TDbDna(), TDbDnaSaHuge(), Parallel());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<SimpleType<unsigned char, Dna5_>, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<String<char, Alloc<Tag<StringOfMaxSize256_> > >, Source<> >, Caster<unsigned char, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned char, BitPacked<24, 8> >, Tuple<unsigned int, 3, void>, Tuple<unsigned char, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
[ 81%] Linking CXX executable ../../../bin/join
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/join.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/join.dir/join.cpp.o -o ../../../bin/join  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 81%] Built target join
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 81%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -MF CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o.d -o CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
                 from /usr/include/c++/14/deque:67,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:41:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:    67 |         class Finder< Index<TText, TSpec>, TSpecFinder >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:322:22:   required from ‘void SEQAN_TEST_findAllExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   322 |     findAllExactIndex(res, readPieces, esaFinder, demultiplexStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:552:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:    67 |         class Finder< Index<TText, TSpec>, TSpecFinder >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   501 |     doAll(res, multiplex, barcodes, esaFinder, demultiplexStats, false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:177:13:   required from ‘void SEQAN_TEST_buildVariations_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   177 |         Dna5String barcode = "ACTNG";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                    ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:549:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSize = unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16:   required from ‘typename seqan::Suffix<const T>::Type seqan::suffix(const StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TPosition = Pair<unsigned int, unsigned int, Tag<Pack_> >; typename Suffix<const T>::Type = Segment<const String<SimpleType<unsigned char, Dna5Q_> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   768 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25:   required from ‘seqan::Pair<typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator<TSA, TSpec>, TQuery&, typename Difference<T>::Type) [with TText = const StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSA = const String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSpec = SortedList; TQuery = const String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<TLeft, const Tag<Standard_> >::Type = const Pair<unsigned int, unsigned int, Tag<Pack_> >*; typename Difference<T>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   803 |                         TSuffix         suf = suffix(text, *treeIter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                               ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23:   required from ‘seqan::Pair<typename seqan::Iterator<const TLimitsString, const seqan::Tag<seqan::Standard_> >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TQuery = String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<const TLimitsString, const Tag<Standard_> >::Type = const Pair<unsigned int, unsigned int, Tag<Pack_> >*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   897 |                 return _equalRangeSA(text, SearchTreeIterator<TSA const, SortedList>(sa), query);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38:   required from ‘void seqan::_findFirstIndex(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >; EsaFindMlr = const Tag<FinderMlr_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1930 |                 finder.range = equalRangeSAIterator(indexText(index), indexSA(index), pattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   290 |                 int res = findExactIndex(readPieces[i], esaFinder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49:   required from ‘int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, unsigned int, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   653 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37:   required from ‘int seqan::readBatch(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&, unsigned int) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   819 |         res = seqIO._impl->readBatch(ids, seqs, num, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:72:15:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    72 |         if (readBatch(ids, seqs, seqStream, records) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49:   required from ‘int seqan::SequenceStreamImpl_::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   823 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35:   required from ‘int seqan::readAll(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   940 |         res = seqIO._impl->readAll(ids, seqs, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:90:13:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    90 |         if (readAll(bcids, bcs, bcStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15:   required from ‘typename seqan::Parameter_<seqan::Index<TObject, TSpec> >::Type seqan::container(Finder<Index<TObject, TSpec>, TSpecFinder>&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; typename Parameter_<Index<TObject, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   118 |                 return value(me.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18:   required from ‘typename seqan::Parameter_<typename seqan::Haystack<TFinder>::Type>::Type seqan::haystack(TObject&) [with TObject = Finder<Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> > >; typename Parameter_<typename Haystack<TFinder>::Type>::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >&; typename Haystack<TFinder>::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5Q_> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1165 |         return container(obj);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1928:40:   required from ‘void seqan::_findFirstIndex(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >; EsaFindMlr = const Tag<FinderMlr_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1928 |                 Index<TText, TSpec> &index = haystack(finder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                              ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   290 |                 int res = findExactIndex(readPieces[i], esaFinder);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned int, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5Q_> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9:   required from ‘void clipBarcodes(TSeqs&, const seqan::String<int>&, unsigned int) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   355 |                         erase(seqs[i], 0 , len);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14:   required from ‘void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   344 |         clipBarcodes(seqs, matches, 6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9:   required from ‘void clipBarcodes(TSeqs&, const seqan::String<int>&, unsigned int) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   355 |                         erase(seqs[i], 0 , len);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14:   required from ‘void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   344 |         clipBarcodes(seqs, matches, 6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15:   required from ‘typename seqan::Parameter_<seqan::Index<TObject, TSpec> >::Type seqan::container(Finder<Index<TObject, TSpec>, TSpecFinder>&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; typename Parameter_<Index<TObject, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   118 |                 return value(me.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   326 |         int hit = findExactIndex(prefices[i], finderSet[tid]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   501 |     doAll(res, multiplex, barcodes, esaFinder, demultiplexStats, false);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  497 |                                 tmpRef->i1 = localPos;
      |                                 ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  376 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned int, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:418:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   418 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned int, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, TPack>, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag<seqan::Pack_>; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   426 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; unsigned int m = 7; TPack = Tag<Pack_>; TPair = Pair<unsigned int, unsigned int, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5Q_>, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >, Multi<Sampler<7, Tag<Pack_> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  438 |             tmpRef->i1 = localPos;
      |             ~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned int, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from ‘void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   498 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>; typename TCompare::first_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>; typename TCompare::first_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>; typename TCompare::first_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from ‘void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   284 |         indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5Q_> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5Q_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5Q_>, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 82%] Linking CXX executable ../../../bin/test_sflex_demultiplex
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_demultiplex.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -o ../../../bin/test_sflex_demultiplex  -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Built target test_sflex_demultiplex
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 83%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -MF CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o.d -o CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from ‘int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   501 |                 res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                       ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38:   required from ‘int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String<char, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   697 |         res = seqIO._impl->readRecord(id, seq, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |               ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:150:24:   required from ‘void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   150 |                 if (seqan::readRecord(id, seq, inStream) == 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7:   required from ‘unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = Mean]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   219 |         erase(seq, cut_pos, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27:   required from ‘void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |                         unsigned res = trimRead(seq, 20, m);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7:   required from ‘unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = Mean]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   219 |         erase(seq, cut_pos, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27:   required from ‘void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   153 |                         unsigned res = trimRead(seq, 20, m);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                        ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 84%] Linking CXX executable ../../../bin/test_sflex_trimming
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_trimming.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -o ../../../bin/test_sflex_trimming  -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 84%] Built target test_sflex_trimming
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -MF CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o.d -o CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:51:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of ‘unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:224:29:   required from ‘void SEQAN_TEST_strip_pair_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:   224 |         unsigned insert = stripPair(seq1,seq2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |                           ~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:245:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >&)’ is deprecated [-Wdeprecated-copy]
  297 |         TAlign align = ret.i2;
      |                ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:59:15:   required from ‘void SEQAN_TEST_get_overlap_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    59 |     TSequence seq1 = "AAAAAAAAA";
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |               ^~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:239:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15:   required from ‘unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   538 |                 seqan::erase(seq, length(seq) - overlap, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from ‘void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |         int removed = stripAdapter(seq, ada, Auto());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15:   required from ‘unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   538 |                 seqan::erase(seq, length(seq) - overlap, length(seq));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from ‘void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |         int removed = stripAdapter(seq, ada, Auto());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = String<SimpleType<unsigned char, Dna5Q_> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = String<SimpleType<unsigned char, Dna5Q_> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:368:17:   required from ‘typename seqan::Source<seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> > >::Type& seqan::source(Gaps<TSequence, Tag<ArrayGaps_> >&) [with TSequence = String<SimpleType<unsigned char, Dna5Q_> >; typename Source<Gaps<TSequence, Tag<ArrayGaps_> > >::Type = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   368 |     return value(gaps._source);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:230:22:   required from ‘unsigned int getOverlap(TAlign&) [with TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   230 |         return length(source(row1)) - countTotalGaps(row2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:533:26:   required from ‘unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   533 |         int overlap = getOverlap(ret.i2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from ‘void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   198 |         int removed = stripAdapter(seq, ada, Auto());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
[ 86%] Linking CXX executable ../../../bin/test_sflex_adapter
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_adapter.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -o ../../../bin/test_sflex_adapter  -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 86%] Built target test_sflex_adapter
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -MF CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o.d -o CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:52:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1048 |     TSize_ ret_ = _clearSpace(
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22:   required from ‘void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   604 |                 erase(seqs[i], 0, head);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12:   required from ‘void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/usr/include/c++/14/bits/stl_function.h:117:12: note:   446 |     preTrim(seqs2, ids2, 3, 3, 4, stats);
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
/usr/include/c++/14/bits/stl_function.h:117:12: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/usr/include/c++/14/bits/stl_function.h:117:12: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna_>*; TSource1 = SimpleType<unsigned char, Dna_>*; TSource2 = SimpleType<unsigned char, Dna_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22:   required from ‘void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   604 |                 erase(seqs[i], 0, head);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12:   required from ‘void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   446 |     preTrim(seqs2, ids2, 3, 3, 4, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [31]; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [31]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TString2 = char [31]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TValue = char [31]]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:59:16:   required from ‘void SEQAN_TEST_findN_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:    59 |     appendValue(seqs, "ATGACTGTACACGTGATCGTACGTAGCAGC");
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:625:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Alloc<> >; TValue = const char [7]; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna5Q_> >; TTargetSpec = Alloc<>; TValue = char [7]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna5Q_> >; TString2 = char [7]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna5Q_> > >; TValue = char [7]]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:335:16:   required from ‘void SEQAN_TEST_processN_paired_multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   335 |     appendValue(multiplex, "ACTGTA");
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:629:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna_>; TValueTarget = SimpleType<unsigned char, Dna_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from ‘static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [11]; TExpand = seqan::Tag<seqan::TagGenerous_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1481 |                 valueConstruct(begin(me, Standard()) + me_length, temp_copy); //??? this should be valueMoveConstruct
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from ‘void seqan::appendValue(String<TValue, TSpec>&, const TValue&, Tag<TUsage>) [with TTargetValue = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [11]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1500 |     AppendValueToString_<Tag<TExpand> >::appendValue_(me, _value);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from ‘void seqan::appendValue(StringSet<TString, Owner<> >&, const TString2&, Tag<TExpand>) [with TString = String<SimpleType<unsigned char, Dna_>, Alloc<> >; TString2 = char [11]; TExpand = TagGenerous_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   146 |     appendValue(me.strings, obj, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from ‘void seqan::appendValue(T&, const TValue&) [with T = StringSet<String<SimpleType<unsigned char, Dna_>, Alloc<> > >; TValue = char [11]]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1718 |     appendValue(me, _value, typename DefaultOverflowImplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:427:16:   required from ‘void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   427 |     appendValue(seqs, "ACGTAACTGA");
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1960 |             SEQAN_TEST_ ## test_name<true>();                           \
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[ 87%] Linking CXX executable ../../../bin/test_sflex_general_processing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_general_processing.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -o ../../../bin/test_sflex_general_processing  -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Built target test_sflex_general_processing
make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -MF CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o.d -o CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:53:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  246 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 |         public ::std::binary_function<TGapAnchor, TGapAnchor, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function ‘int seqan::_globalAlignmentScore(const String<TValue, TSpec>&, const String<TValue2, TSpec2>&, const MyersBitVector&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   70 |     if (length(seqH) < length(seqV))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   74 |         const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
      |         ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function ‘seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  409 |     if ((actualCol == 0) || (actualRow == 0))
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  412 |         if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
      |         ^~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  485 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  495 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  505 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  515 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  525 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  535 |         public ::std::binary_function<TAlignedRead, TAlignedRead, bool>
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function ‘void seqan::convertMatchesToGlobalAlignment(FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2357 |     if (alignQualityStoreLengthPre == 0u)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2361 |         sortAlignedReads(store.alignedReadStore, SortBeginPos());
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   45 |     struct filterI1 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   54 |     struct filterI2 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   63 |     struct filterI3 : public ::std::unary_function<TValue, TResult>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  401 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  507 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   42 |     struct MergeStreamComparer : public ::std::binary_function < PageBucket<TValue>,
      |                                                ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |                 public ::std::binary_function <
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  257 |                 struct insertBucket : public ::std::unary_function<TPageBucket,void>
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  372 |                 struct insertBucket : public ::std::unary_function<TPageBucket, void> {
      |                                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  373 |         struct SetLess_ : public ::std::binary_function<TElement, TElement, bool>
      |                                         ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  404 |     public::std::binary_function<FibreRecord, unsigned, bool> // functor for operator>
      |                  ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  744 |     public::std::unary_function<InType, Result>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  760 |     public::std::unary_function<InType, InType>
      |                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  854 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  902 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  970 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1039 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1073 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 1121 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2093 |     struct _qgramComp : public ::std::binary_function<InType,InType,Result> {
      |                                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
 2112 |         public ::std::binary_function<
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   46 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   85 |                 public ::std::binary_function < TSAValue, TSAValue, bool >
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   98 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  112 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  127 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  110 |         public ::std::binary_function < SkewDCStream<TValue>,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  143 |         public ::std::binary_function < SkewDCStream<Triple<T1, T2, Tuple<T, SIZE, BitPacked<> >, Pack> >,
      |                       ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   65 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   99 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  118 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  132 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  154 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  175 |         public std::unary_function<TValue, TResult>
      |                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  185 |         public std::binary_function<TValue, TValue, TResult>
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   57 |     struct _skew7NCompMulti : public std::binary_function<TValue, TValue, TResult> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
   97 |         public std::binary_function<
      |                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  141 |                 public std::unary_function<TValue, TResult>
      |                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   59 |         struct _mapInverse : public std::unary_function<InType,Result> {
      |                                          ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  164 |         struct _mapInverseMulti : public std::unary_function<InType,Result> {
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  313 |                                 LCP[isa - 1] = h;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  379 |                 for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  380 |                                 LCP[i] = h | mark;
      |                                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function ‘void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet<TSequence, TSpec>&, const TSA&, Kasai)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  483 |                 for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
      |                 ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  484 |                                 LCP[i] = h | mark;
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  144 |         struct _filterGlobalizer : public ::std::unary_function<InType,Result> {
      |                                                  ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  585 |                 public ::std::binary_function< Pair<T1,T2,TPack>, Pair<T1,T2,TPack>, bool>
      |                               ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function ‘void seqan::_storeWotdChildren(Index<TObject, IndexWotd<Dfi<TPredHull, TPred> > >&, TSize, TSize)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  504 |                         } else
      |                           ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  506 |                                 for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
      |                                 ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  149 |         struct RepeatLess_ : public ::std::binary_function<TPos, TPos, bool>
      |                                            ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function ‘typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1498 |             for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
      |             ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1501 |                         if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
      |                         ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp: In function ‘seqan::ArgumentParser initParser()’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:610:10: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  610 |     std::auto_ptr<ArgumentParserBuilder> argParseBuilder;
      |          ^~~~~~~~
In file included from /usr/include/c++/14/memory:78,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/test_system.h:53,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:62,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
/usr/include/c++/14/bits/unique_ptr.h:59:28: note: declared here
   59 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:71:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of ‘unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:411:12:   required from ‘unsigned int stripPairBatch(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TSeq>&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TSeq>&, AdapterTrimmingStats&, bool) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TId = seqan::String<char, seqan::Alloc<> >]’
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:   411 |                 stripPair(read1, read2);
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:       |                 ~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1926:27:   required from ‘void adapterTrimmingStage(AdapterTrimmingParams&, TSeqs&, TIds&, TSeqs&, TIds&, bool) [with TSeqs = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIds = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >]’
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:  1926 |             stripPairBatch(seqSet1[i], idSet1[i], seqSet2[i], idSet2[i], params.stats, tagOpt);
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:       |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2726:37:   required from here
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:  2726 |                 adapterTrimmingStage(adapterTrimmingParams, seqSet1, idSet1, seqSet2, idSet2, tagOpt);
/usr/include/c++/14/bits/unique_ptr.h:59:28: note:       |                 ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Tag<seqan::ArrayGaps_> >::Align(const seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Tag<seqan::ArrayGaps_> >&)’ is deprecated [-Wdeprecated-copy]
  297 |         TAlign align = ret.i2;
      |                ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because ‘seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Tag<seqan::ArrayGaps_> >’ has user-provided ‘seqan::Align<TSource, TSpec>& seqan::Align<TSource, TSpec>::operator=(const seqan::Align<TSource, TSpec>&) [with TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = seqan::Tag<seqan::ArrayGaps_>]’
  131 |     Align & operator=(Align const & other)
      |             ^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, const TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15:   required from ‘void seqan::assignValue(Holder<TValue, Tag<Tristate_> >&, const TSource&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1020 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24:   required from ‘void seqan::assign(Holder<TValue, Tag<Tristate_> >&, const Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1065 |             assignValue(target_, value(source_));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15:   required from ‘const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >& seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >::operator=(const seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   170 |         assign(*this, source_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:    67 |         class Finder< Index<TText, TSpec>, TSpecFinder >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14:   required from ‘int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIdsVec = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  1733 |         doAll(groups, params.multiplex, params.barcodes, esaFinder, params.stats, params.exclude);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:  2659 |                 if (demultiplexingStage(demultiplexingParams, seqSet, idSet,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2660 |                                     esaFinder, map, generalStats) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  142 |     target = source;
      |     ~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from ‘void seqan::operator<<(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   826 |         assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   110 |                 suffixArray << creator;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  802 |             *_cur = *src;
      |             ~~~~~~^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  347 |                 o1.i1 = typename Value<typename Value<TOut124>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  357 |                 o0.i1 = typename Value<typename Value<TOut0>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |                 o3.i1 = typename Value<typename Value<TOut3>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  365 |                 o5.i1 = typename Value<typename Value<TOut5>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  369 |                 o6.i1 = typename Value<typename Value<TOut6>::Type, 1>::Type();
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                       ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                        ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                         ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  408 |         /* 2 */                           o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  412 |         /* 1 */                o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  424 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  426 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  428 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  430 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  435 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  437 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  441 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  454 |         /* 0 */  cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3,                                     *textIn)))); ++textIn; o0.i1 = p; ++p;
      |                                                                                                                          ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  456 |         /* 6 */  cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4,                      cp___(o6,0,    *textIn))))); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                           ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  458 |         /* 5 */  cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5,           cp___(o5,0,cp___(o6,1,    *textIn)))))); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  460 |         /* 4 */     o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  465 |         /* 3 */  cp___(o0,4,cp___(o1,5,           cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,    *textIn)))))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  467 |         /* 2 */     o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  471 |         /* 1 */     o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p;
      |                                                                                                                            ~~~~~~^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5Q_>; TValueTarget = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5Q_> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49:   required from ‘int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, unsigned int, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   653 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37:   required from ‘int seqan::readBatch(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&, unsigned int) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna5Q_> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   819 |         res = seqIO._impl->readBatch(ids, seqs, num, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1225:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1225 |     if (seqan::readBatch(ids, seqs, seqStream, records) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from ‘int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader<TFile, DoublePass<TSpec> >&, const TTag&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TSpec = Tag<StringReader_>; TTag = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   262 |     reserve(seq, seqLength, Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from ‘int seqan::readRecord(TIdString&, TSeqString&, RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = String<char, Alloc<> >; TSeqString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TFile = String<char, MMap<> >; TPass = DoublePass<Tag<StringReader_> >; Fasta = Tag<TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   557 |     int res = _clearAndReserveMemory(meta, seq, reader, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49:   required from ‘int seqan::SequenceStreamImpl_::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   823 |                     if ((res = seqan::readRecord(id, seq, *_mmapReaderDoublePass, tag)) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35:   required from ‘int seqan::readAll(StringSet<TString, TSpec>&, StringSet<TSequence, TSpec>&, SequenceStream&) [with TId = String<char, Alloc<> >; TIdSpec = Owner<>; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSeqSpec = Owner<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   940 |         res = seqIO._impl->readAll(ids, seqs, Fasta());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |               ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1254:23:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1254 |     if (seqan::readAll(params.barcodeIds, params.barcodes, bcStream) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairIncrementer_<TPair, TLimits>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned int, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   382 |                 setHost(p, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1032 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::pop(Pipe<TInput, TSpec>&, TValue&) [with TInput = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe<Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   386 |                                         _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~^
     387 |                                                 renamer, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~
     388 |                                                 names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type*) [with TLimitsString_ = seqan::String<unsigned int, seqan::Alloc<> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; typename seqan::EnableIf<seqan::IsSameType<TLimitsString, TLimitsString_> >::Type = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   294 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   108 |                 creator_t       creator(unsigner, stringSetLimits(stringSet));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  619 |         Ref_ = *me;
      |         ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12:   required from ‘void seqan::_createSuffixArrayPipelining(TSA&, const StringSet<TSequence, TSpec>&, TAlgSpec) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |     struct Pipe< TInput, Multi<Skew7, TPair_, TLimitsString> >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of ‘void seqan::posLocalize(TResult&, const Pair<R1, R2, RPack>&, const String<TRightValue, TRightSpec>&) [with TResult = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSize = unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = unsigned int; TPack = Tag<Pack_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16:   required from ‘typename seqan::Suffix<const T>::Type seqan::suffix(const StringSet<TString, TSpec>&, const TPosition&) [with TString = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSpec = Owner<>; TPosition = Pair<unsigned int, unsigned int, Tag<Pack_> >; typename Suffix<const T>::Type = Segment<const String<SimpleType<unsigned char, Dna5_>, Alloc<> >, SuffixSegment>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   768 |     posLocalize(lPos, pos, stringSetLimits(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25:   required from ‘seqan::Pair<typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator<TSA, TSpec>, TQuery&, typename Difference<T>::Type) [with TText = const StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSA = const String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSpec = SortedList; TQuery = const String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<TLeft, const Tag<Standard_> >::Type = const Pair<unsigned int, unsigned int, Tag<Pack_> >*; typename Difference<T>::Type = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   803 |                         TSuffix         suf = suffix(text, *treeIter);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                               ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23:   required from ‘seqan::Pair<typename seqan::Iterator<const TLimitsString, const seqan::Tag<seqan::Standard_> >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TQuery = String<SimpleType<unsigned char, Dna5Q_> >; typename Iterator<const TLimitsString, const Tag<Standard_> >::Type = const Pair<unsigned int, unsigned int, Tag<Pack_> >*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   897 |                 return _equalRangeSA(text, SearchTreeIterator<TSA const, SortedList>(sa), query);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38:   required from ‘void seqan::_findFirstIndex(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >; EsaFindMlr = const Tag<FinderMlr_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1930 |                 finder.range = equalRangeSAIterator(indexText(index), indexSA(index), pattern);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   326 |         int hit = findExactIndex(prefices[i], finderSet[tid]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14:   required from ‘int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIdsVec = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1733 |         doAll(groups, params.multiplex, params.barcodes, esaFinder, params.stats, params.exclude);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2659 |                 if (demultiplexingStage(demultiplexingParams, seqSet, idSet,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2660 |                                     esaFinder, map, generalStats) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  699 |     result = pos;
      |     ~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from ‘void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1610 |     _arrayMoveForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from ‘void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1444 |     arrayMoveForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from ‘void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1465 |     _arrayConstructMovePointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from ‘static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   849 |             arrayConstructMove(old_array, old_array + start, seq_array);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(String<TValue, TSpec>&, TSize, TPosition, TPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = unsigned int; TPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1014 |     return ClearSpaceStringBase_<Tag<TExpand> >::_clearSpace_(me, size, pos_begin, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22:   required from ‘void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TMulti = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   716 |                 erase(seqs[i], 0, head);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24:   required from ‘void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1607 |                 preTrim(seqs, ids, demultiplexingParams.multiplex, processingParams.trimLeft,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1608 |                     processingParams.trimRight, processingParams.minLen, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2655 |                 preprocessingStage(seqSet[0], idSet[0], demultiplexingParams,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2656 |                     processingParams, parser, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1589 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   317 |             sorter << sampler;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  599 |             tmp.i1 = localPos;
      |             ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   324 |             TNames_Sliced               names_sliced;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop(TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24:   required from ‘void seqan::Pool<TValue, TSpec>::pop(TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   925 |             reader->pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15:   required from ‘void seqan::pop(Pool<TValue, TPoolSpec>&, TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1159 |         me.pop(Ref_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    62 |                         pop(in, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~^~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  926 |             Ref_ = *cur;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   414 |                                 if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   415 |                                 if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   432 |                                 if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   443 |                                 push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   243 |     struct Pipe< TInput, Skew7 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   404 |                                         _copy(inValue[0], *in.in1);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   422 |                                         _copy(inValue[5], *in.in3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of ‘static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |                                         _copy(inValue[6], *in.in4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                         ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   464 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from ‘seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   431 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from ‘void seqan::assign(String<TValue, TSpec>&, Pipe<TInput, TSpec>&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TStringSpec = Alloc<>; TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Skew7, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   801 |         for (TDestIter _cur = begin(dest, Standard()), _end = end(dest, Standard()); _cur != _end; ++_cur, ++src)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                                                                                                            ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
  385 |             memcpy(&dst.i.i1, &src.i1, sizeof(T1));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: ‘struct seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ declared here
   95 | struct Pair<T1, T2, Pack>
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5Q_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from ‘void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5Q_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1641 |     _arrayMoveBackwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from ‘void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType<unsigned char, Dna5Q_>*; TSource1 = SimpleType<unsigned char, Dna5Q_>*; TSource2 = SimpleType<unsigned char, Dna5Q_>*]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1213 |         arrayMoveBackward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from ‘void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1660 |     arrayMove(array_begin + keep_from, array_begin + array_length, array_begin + move_to);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from ‘void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType<unsigned char, Dna5Q_>; size_t = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1681 |     _arrayClearSpacePointer(array_begin, array_length, keep_from, move_to, typename IsSimple<TValue>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5Q_>; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1048 |     TSize_ ret_ = _clearSpace(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                   ~~~~~~~~~~~^
    1049 |         me,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~                   
    1050 |         static_cast<TSize_>(size),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~
    1051 |         static_cast<TPos_>(pos_begin),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1052 |         static_cast<TPos_>(pos_end),
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1053 |         tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |         ~~~~                  
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from ‘TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2212 |     return resizeSpace(me, size, pos_begin, pos_end, typename DefaultOverflowExplicit<T>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |            ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from ‘void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String<SimpleType<unsigned char, Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2267 |     resizeSpace(me, 0, pos, pos_end);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22:   required from ‘void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TMulti = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:   716 |                 erase(seqs[i], 0, head);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24:   required from ‘void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  1607 |                 preTrim(seqs, ids, demultiplexingParams.multiplex, processingParams.trimLeft,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    1608 |                     processingParams.trimRight, processingParams.minLen, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:  2655 |                 preprocessingStage(seqSet[0], idSet[0], demultiplexingParams,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                 ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2656 |                     processingParams, parser, generalStats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note:       |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1621 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5Q_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of ‘void seqan::assign(TTarget&, TSource&) [with TTarget = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TSource = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&, TValue2&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; TValue2 = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   730 |         assign(_dataValue(me), value_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from ‘void seqan::create(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   674 |             create(me, _dataValue(me));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from ‘typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(Holder<TValue, Tag<Tristate_> >&) [with TValue = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >; typename Reference<Holder<TValue, Tag<Tristate_> > >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   990 |         create(me);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15:   required from ‘typename seqan::Parameter_<seqan::Index<TObject, TSpec> >::Type seqan::container(Finder<Index<TObject, TSpec>, TSpecFinder>&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; typename Parameter_<Index<TObject, TSpec> >::Type = Index<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >, IndexEsa<> >&]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   118 |                 return value(me.index);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                        ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19:   required from ‘bool seqan::find(Finder<Index<TObject, TSpec>, TSpecFinder>&, const TPattern&) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag<FinderMlr_>; TPattern = String<SimpleType<unsigned char, Dna5Q_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   292 |                         _findFirstIndex(finder, needle(pattern), TSpecFinder());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10:   required from ‘int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   274 |         if (find(finder, prefix))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |             ~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33:   required from ‘void findAllExactIndex(seqan::String<int>&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   326 |         int hit = findExactIndex(prefices[i], finderSet[tid]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                   ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19:   required from ‘void doAll(seqan::StringSet<seqan::String<int> >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TMultiplex = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:   458 |         findAllExactIndex(matches, multiplex, esaFinder, stats);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14:   required from ‘int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >; TIdsVec = seqan::String<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFinder = seqan::Finder<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  1733 |         doAll(groups, params.multiplex, params.barcodes, esaFinder, params.stats, params.exclude);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:  2659 |                 if (demultiplexingStage(demultiplexingParams, seqSet, idSet,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    2660 |                                     esaFinder, map, generalStats) != 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note:       |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >&)’ is deprecated [-Wdeprecated-copy]
  133 |     target = source;
      |     ~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because ‘seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >, seqan::IndexEsa<> >’ has user-provided ‘seqan::Index<TText, seqan::IndexEsa<TSpec> >::Index(const seqan::Index<TText, seqan::IndexEsa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = void]’
  548 |                 Index(Index const &other):
      |                 ^~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator*() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>; typename seqan::Value<seqan::Pipe<TInput, seqan::Namer<TCompare> > >::Type = seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22:   required from ‘const typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator*() const [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<seqan::Pipe<TInput, seqan::Filter<TFunctor> > >::Type = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   148 |             return F(*in);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                      ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  134 |             tmp.i1 = getValueI1(*in);
      |             ~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Namer<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> >, unsigned int, seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   328 |             names_sliced << slicedPos;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9:   required from ‘void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TFunctor = _skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > >; TOut1 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut2 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut4 = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    64 |                                 push(out4, i);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   342 |                                 _skew7SeparateSlices(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~~~~~~~^
     343 |                                         names_sliced, func_slice,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~
     344 |                                         names_S1, names_S2, names_S4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   416 |                                 if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   required from ‘bool seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   350 |                 _skew7ExtendMulti(
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^
     351 |                                         textIn, limits,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~
     352 |                                         names_S1, names_S2, names_S4,
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     353 |                                         sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NCompMulti<seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23:   required from ‘bool seqan::control(Pipe<TInput, TSpec>&, const TCommand&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >; TCommand = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   651 |         return control(me.in, command);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int> > >, Filter<_skew7GlobalSlicedMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> >, unsigned int, Pair<unsigned int, unsigned int, Tag<Pack_> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 7, seqan::BitPacked<> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  165 |             me.tmp.i1 = me.last.i1;
      |             ~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106:   required from ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   401 |         /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                                 ^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   341 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   352 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   161 |             if (r >= 6) push(out6, o6);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   162 |             if (r >= 5) push(out5, o5);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   179 |             if (r >= 3) push(out3, o3);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   190 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   173 |     struct Pipe< TInput, Skew3 >
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |            ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   required from ‘seqan::Pipe<TInput, seqan::Skew7>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   312 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::setHost(PairDecrementer_<TPair, TLimits, m>&, const TLimits2&) [with TPair = Pair<unsigned int, unsigned int, Tag<Pack_> >; TLimits = String<unsigned int, Alloc<> >; unsigned int m = 7; TLimits2 = String<unsigned int, Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   537 |                         setHost(localPos, limits);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned int, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
 1119 |         me.pos = TPair(0, 0);
      |         ~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13:   required from ‘void seqan::Pipe<TInput, seqan::Multi<seqan::Sampler<m, seqan::BitPacked<> >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   544 |             fill();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19:   required from ‘bool seqan::control(Pipe<TInput, Multi<Sampler<m, TPack>, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair<unsigned int, unsigned int, Tag<Pack_> >; TLimitsString = String<unsigned int, Alloc<> >; ControlBeginRead = Tag<ControlBeginRead_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   613 |         me.prepare();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TSpec = Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NCompMulti<Pair<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<SimpleType<unsigned char, Dna5_>, 7, BitPacked<> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >, Multi<Sampler<7, BitPacked<> >, Pair<unsigned int, unsigned int, Tag<Pack_> >, String<unsigned int, Alloc<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  557 |                         tmp.i1 = localPos;
      |                         ~~~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of ‘TResult seqan::_skew7NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   345 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   163 |             if (r >= 4) push(out124, o4);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew7>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   362 |                 _skew7Extend(textIn, names_linear, sortedS0, sortedS3, sortedS5, sortedS6, sortedS124);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<7, Tag<Pack_> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 7, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104:   required from ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   148 | /* 4 */                                                 o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn).i2; ++nameIn; o4.i1 = p--;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                                                                        ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   247 |             TNames_Sliced               names_sliced(map_sliced);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  143 |                 last = *in;
      |                 ~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::end() [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   684 |                         else                    handler2->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16:   required from ‘bool seqan::Pool<TValue, TSpec>::endWrite() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   953 |                                 writer->end();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13:   required from ‘seqan::Pool<TValue, TSpec>::~Pool() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   837 |             endWrite();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   259 |                 TNames_Linear_Unique        names_linear(map_linear);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                             ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  584 |                                                 *cb->cur = pool.undefinedValue;
      |                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   123 |             push(out0, o0);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   required from ‘seqan::Pipe<TInput, seqan::Skew3>::Pipe(TInput&) [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   218 |                         process(_textIn);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~^~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27:   required from ‘bool seqan::CompareSkewDCStream<TValue>::operator()(const seqan::SkewDCStream<TValue>&, const seqan::SkewDCStream<TValue>&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   124 |                 if (a.i.i3[i] < b.i.i3[i]) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   307 |                                 if (!streamGreater(inValue[stream],inValue[rank[right]])) break;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   required from ‘seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   319 |                         insertStream(rank[first]);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13:   required from ‘seqan::Pipe<TInput, seqan::Skew7>& seqan::Pipe<TInput, seqan::Skew7>::operator++() [with TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   440 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13:   required from ‘seqan::Pipe<TInput, seqan::Counter>& seqan::Pipe<TInput, seqan::Counter>::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >, seqan::Skew7>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   105 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   446 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew7NComp<Pair<unsigned int, Tuple<unsigned int, 7, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of ‘bool seqan::control(Pipe<TInput, Namer<TCompare> >&, const ControlBeginRead&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TCompare = _skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>; ControlBeginRead = Tag<ControlBeginRead_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23:   required from ‘bool seqan::beginRead(Pipe<TInput, TSpec>&) [with TInput = Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TSpec = Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   712 |         return control(me, ControlBeginRead());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1354 |         if (!beginRead(src)) return false;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |              ~~~~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  164 |             me.last = *me.in;
      |             ~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of ‘TResult seqan::_skew3NComp<TValue, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TResult = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30:   required from ‘seqan::Pipe<TInput, seqan::Namer<TCompare> >& seqan::Pipe<TInput, seqan::Namer<TCompare> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TCompare = seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   141 |             if (!eof(in) && C(last, *in) != 0) {
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                             ~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   251 |             names_sliced << namer;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   74 |             const TStoredValue *sa = a.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of ‘seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >’ may result in an unaligned pointer value [-Waddress-of-packed-member]
   75 |             const TStoredValue *sb = b.i2.i;
      |                                      ~~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   101 |             push(out12, o2);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   required from ‘bool seqan::Pipe<TInput, seqan::Skew3>::process(TInput_&) [with TInput_ = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   269 |                 _skew3Extend(textIn, names_linear, sortedS0, sortedS12);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13:   required from ‘seqan::Pipe<TInput, seqan::Filter<TFunctor> >& seqan::Pipe<TInput, seqan::Filter<TFunctor> >::operator++() [with TInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TFunctor = seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   153 |             ++in;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::WriteFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >; TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3NComp<seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   required from ‘bool seqan::operator<<(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >; TSpec = SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >, Sampler<3> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1395 |         return assign(dest, src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  937 |             *cur = Val_;
      |             ~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, seqan::Tag<seqan::Pack_> >]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38:   required from ‘bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3ExtendComp<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >; TOut12 = Pool<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:    86 |             o2.i2[0] = (*nameIn).i2; ++nameIn;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                      ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pipe<Pool<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int>, unsigned int, File<Async<> > > > >, Namer<_skew3NComp<Pair<unsigned int, Tuple<unsigned int, 3, Tag<Pack_> >, Tag<Pack_> >, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<TBufferHandler, seqan::MapperMemAdapter>::push(const TValue&) [with TBufferHandler = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   673 |             if (handler1)       handler1->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  361 |             buffer[pool.handlerArgs(Val_)] = Val_;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘void seqan::Handler<seqan::Pool<TValue, seqan::MapperSpec<TConfig> >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TConfig = seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25:   required from ‘void seqan::Handler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::push(const TValue&) [with THandler1 = seqan::Handler<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   674 |                         else                    handler2->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                 ~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25:   required from ‘void seqan::Pool<TValue, TSpec>::push(const TValue&) [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   930 |             writer->push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16:   required from ‘void seqan::push(Pool<TValue, TPoolSpec>&, const TValue&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1191 |         me.push(Val_);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1356 |             push(dest, *src);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   required from ‘bool seqan::assign(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  1388 |         return beginWrite(dest) && append(dest, src) && endWrite(dest);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                    ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  567 |                         *cb.cur = item;
      |                         ~~~~~~~~^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >; TConfig = MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6:   required from ‘void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   301 |                                         ++in.in5;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapSliced<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13:   required from ‘bool seqan::append(Pool<TValue, TPoolSpec>&, TSource&) [with TValue = Pair<unsigned int, unsigned int, Tag<Pack_> >; TSpec = MapperSpec<MapperConfigSize<_skew3NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > >; TSource = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew3NMapSliced<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1357 |             ++src;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42:   [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >& seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because ‘seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >::Pair(const seqan::Pair<T1, T2, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = unsigned int]’
  110 |     SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {}
      |                       ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of ‘seqan::Buffer<TValue>& seqan::processBuffer(Buffer<TValue, PageFrame<typename TConfig::File, Dynamic> >&, BufferHandler<Pool<TValue, MapperSpec<TConfig> >, Tag<ReadFileSpec_> >&) [with TValue = Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >; TConfig = MapperConfigSize<_skew3NMapExtended<Triple<unsigned int, Tuple<unsigned int, 2, void>, Tuple<unsigned int, 2, void>, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > >; typename TConfig::File = File<Async<> >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33:   required from ‘seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::TBuffer& seqan::BufferHandler<seqan::Pool<TValue, TPoolSpec>, seqan::Tag<seqan::ReadFileSpec_> >::next() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   387 |             return processBuffer(*chain.first, *this);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                    ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32:   required from ‘seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::TBuffer seqan::BufferHandler<seqan::Bundle2<TInput1, TInput2>, seqan::Tag<seqan::MultiplexSpec_> >::next() [with TBufferHandler1 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >; TBufferHandler2 = seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> >; TBuffer = seqan::Buffer<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Simple_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   607 |                         else                    return handler2->next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                                                        ~~~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38:   required from ‘void seqan::Handler<TBufferHandler, seqan::AdapterSpec>::pop() [with TBufferHandler = seqan::BufferHandler<seqan::Bundle2<seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::MemorySpec_> >, seqan::BufferHandler<seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Tag<seqan::ReadFileSpec_> > >, seqan::Tag<seqan::MultiplexSpec_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                 buffer = handler.next();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                          ~~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15:   required from ‘seqan::Pool<TValue, TSpec>& seqan::Pool<TValue, TSpec>::operator++() [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >; TSpec = seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   919 |                         reader->pop();
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                         ~~~~~~~~~~~^~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17:   required from ‘seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>& seqan::Pipe<seqan::Bundle2<TInput1, TInput2>, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew3ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TInput12 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew3NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   111 |                 ++in.in2;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  252 |                                         *refNext = *I;
      |                                         ~~~~~~~~~^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  253 |                                         *I = *refPrev;
      |                                         ~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared ‘constexpr seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >& seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >::operator=(const seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >&)’ is deprecated [-Wdeprecated-copy]
  293 |                                         *cur = *refPrev;
      |                                         ~~~~~^~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because ‘seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 2, void>, seqan::Tuple<unsigned int, 2, void>, seqan::Tag<seqan::Pack_> >’ has user-provided ‘seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >::Triple(const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = unsigned int; T2 = seqan::Tuple<unsigned int, 2, void>; T3 = seqan::Tuple<unsigned int, 2, void>]’
  103 |     inline Triple(Triple const &_p)
      |            ^~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 3; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>; typename TCompare::first_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 1; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>; typename TCompare::first_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of ‘const typename seqan::StoredTupleValue_<TValue>::Type& seqan::Tuple<TValue, SIZE, seqan::Tag<seqan::Pack_> >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_<TValue>::Type = unsigned int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25:   required from ‘TResult seqan::_skew7ExtendComp<TValue, EXT_LENGTH, TResult>::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; unsigned int EXT_LENGTH = 2; TResult = int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   191 |                 if (a.i3[i] == b.i3[i]) continue;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                     ~~~~^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21:   required from ‘bool seqan::AdaptorCompare2Less<TCompare>::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>; typename TCompare::first_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >; typename TCompare::second_argument_type = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:    68 |             return C(a, b) < 0;
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                    ~^~~~~~
/usr/include/c++/14/bits/predefined_ops.h:158:30:   required from ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Iterator2 = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   158 |         { return bool(_M_comp(*__it1, *__it2)); }
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                       ~~~~~~~^~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1771:14:   required from ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1771 |           if (__comp(__i, __first))
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |               ~~~~~~^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1811:25:   required from ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<seqan::AdaptorCompare2Less<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int> > >]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  1811 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_algo.h:1902:31:   [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from ‘void seqan::_createSuffixArrayWrapper(TSA&, const StringSet<TSequence, TSpec>&, const TAlgSpec&, True) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TSequence = String<SimpleType<unsigned char, Dna5_>, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   194 |         _createSuffixArrayPipelining(sa, s, Skew7());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from ‘void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String<Pair<unsigned int, unsigned int, Tag<Pack_> >, Alloc<> >; TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TAlgSpec = Skew7]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   221 |         _createSuffixArrayWrapper(sa, s, alg, typename SACreatorRandomAccess_<TSA, TText, TAlgSpec>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag<FibreSA_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   685 |                 createSuffixArray(indexSA(index), indexText(index), alg);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                 ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from ‘bool seqan::indexCreate(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   726 |         return indexCreate(index, fibre, typename DefaultIndexCreator<Index<TText, TSpec>, Tag<TFibre> const>::Type());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from ‘bool seqan::indexRequire(Index<TObject, TSpec>&, Tag<TExpand>) [with TText = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:   835 |                 return indexCreate(index, fibre);                                                       // and create table
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |                        ~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:  2358 |             indexRequire(indexSet, FibreSA());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning:       |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr]
  171 |         return i[k];
      |                ~^
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function ‘void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
  310 |             _fileFormat = this->_checkFormat(*_istreamReader);
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
  313 |         case SeqIOFileType_::FILE_TYPE_AUTO:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pipe<ConcatenatorManyToOne<StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > > >, Source<> >, Caster<SimpleType<unsigned char, Dna5_>, CasterReinterpret> >; TLimitsString = String<unsigned int, Alloc<> >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 4, BitPacked<> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 5, BitPacked<> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<Pair<unsigned int, unsigned int, Tag<Pack_> >, Tuple<unsigned int, 3, void>, Tuple<SimpleType<unsigned char, Dna5_>, 6, BitPacked<> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=]
  395 |         /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
      |                                                                                                                                  ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here
  397 |                         case 5:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=]
  398 |         /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
      |                                                                                                                                   ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here
  400 |                         case 4:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=]
  402 |                                                                                                                 cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                                                                                  ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here
  404 |                         case 3:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=]
  405 |         /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
      |                                                                                                                                    ^~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here
  407 |                         case 2:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=]
  409 |                                                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                                                          ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here
  411 |                         case 1:
      |                         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function ‘bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe<Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<filterI1<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >, Filter<filterI2<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int> > >; TNameInput = Pool<Pair<unsigned int, unsigned int, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapLinear<Pair<unsigned int, unsigned int, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >; TOut0 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 3, int>, unsigned int, File<Async<> > > > >; TOut3 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut5 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 4, Tag<Pack_> >, Tag<Pack_> >, 1, int>, unsigned int, File<Async<> > > > >; TOut6 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, SorterSpec<SorterConfigSize<_skew7ExtendComp<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 5, Tag<Pack_> >, Tag<Pack_> >, 2, int>, unsigned int, File<Async<> > > > >; TOut124 = Pool<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, MapperSpec<MapperConfigSize<_skew7NMapExtended<Triple<unsigned int, Tuple<unsigned int, 3, void>, Tuple<unsigned int, 6, Tag<Pack_> >, Tag<Pack_> >, unsigned int>, unsigned int, File<Async<> > > > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=]
  142 | /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
      |                                                                                                               ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
  144 |         case 5:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=]
  145 | /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
      |                                                                                                                ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
  147 |         case 4:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
  149 |                                                      cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
      |                                                                                                       ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
  151 |         case 3:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=]
  152 | /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
      |                                                                                                                 ~~~~~~^~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
  154 |         case 2:
      |         ^~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
  156 |                                cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
      |                                                                                                         ^~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
  158 |         case 1:
      |         ^~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function ‘void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String<char, Alloc<> >; TSourceIter = Iter<const String<char, Alloc<> >, AdaptorIterator<const char*, Tag<Default_> > >]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: ‘snprintf’ output may be truncated before the last format character [-Wformat-truncation=]
  399 |             snprintf(buffer, 4, "%d", x);
      |                                    ^
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: note: ‘snprintf’ output between 2 and 5 bytes into a destination of size 4
  399 |             snprintf(buffer, 4, "%d", x);
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=QUALITY_CONTROL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=ADAPTER_REMOVAL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 90%] Linking CXX executable ../../../bin/sflexAR
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/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexAR  libseqan_flexlib.a -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake "--color="
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[ 91%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=DEMULTIPLEXING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 91%] Linking CXX executable ../../../bin/sflexDMulti
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/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexDMulti  libseqan_flexlib.a -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 92%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=FILTERING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 93%] Linking CXX executable ../../../bin/sflexFilter
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexFilter.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexFilter  libseqan_flexlib.a -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 93%] Built target sflexFilter
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake "--color="
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make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 94%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -MF CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 95%] Linking CXX executable ../../../bin/seqan_flexbar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexbar.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -o ../../../bin/seqan_flexbar  libseqan_flexlib.a -lrt -L/usr/lib -lz -L/usr/lib -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Built target seqan_flexbar
make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 96%] Building CXX object extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types.h:43,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:27:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip_base.h:33,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
[ 97%] Linking CXX executable ../../../bin/sgip
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../../bin/sgip  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 97%] Built target sgip
make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Building CXX object extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o -MF CMakeFiles/variant_comp.dir/variant_comp.cpp.o.d -o CMakeFiles/variant_comp.dir/variant_comp.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:30:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
   80 | struct FunctorUpcase : public std::unary_function<InType, Result>
      |                                    ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:22:
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  115 | struct FunctorLowcase : public std::unary_function<InType, Result>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  151 | struct FunctorConvert : public std::unary_function<InType,OutType>
      |                                     ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  220 | struct FunctorComplement<char> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  229 | struct FunctorComplement<Dna> : public std::unary_function<Dna,Dna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  239 | struct FunctorComplement<Dna5> : public std::unary_function<Dna5,Dna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  249 | struct FunctorComplement<Rna> : public std::unary_function<Rna,Rna>
      |                                             ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  259 | struct FunctorComplement<Rna5> : public std::unary_function<Rna5,Rna5>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  268 | struct FunctorComplement<DnaQ> : public std::unary_function<DnaQ,DnaQ>
      |                                              ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  280 | struct FunctorComplement<Dna5Q> : public std::unary_function<Dna5Q,Dna5Q>
      |                                               ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
 1436 |                 struct testIODone : public ::std::unary_function<TPageFrame&,bool>
      |                                                   ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:33:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  342 |         public ::std::unary_function<Pair<TKey, TValue>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
  793 |         public ::std::unary_function<Pair<TWeight, TPair>, bool>
      |                       ^~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:117:12: note: declared here
  117 |     struct unary_function
      |            ^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:35:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:238:37: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  238 | struct LessGPosSize : public ::std::binary_function < TIndel, TIndel, bool >
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:256:33: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
  256 | struct LessGPos : public ::std::binary_function < TVariant, TVariant, bool >
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function ‘bool seqan::compareIndelPair(TIndel&, TIndel&, TOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:278:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  278 |     if(options.genotypeAware && predIndel.genotype != refIndel.genotype)
      |     ^~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:281:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  281 |         int sizeTol = int((double)abs(refIndel.indelSize) * options.sizeTolerance);
      |         ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function ‘int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&)’:
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:477:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  477 |     for(TIndelIt it = begin(refIndels); it != end(refIndels); ++it)
      |     ^~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  479 |         for(TIndelIt it = begin(predIndels); it != end(predIndels); ++it)
      |         ^~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String<TCargo>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, int>, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = int]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15:   required from ‘void seqan::findIntervals(const Graph<TSpec>&, const TPropertyMap&, TValue, TValue, String<TEmission>&) [with TSpec = Directed<void, const Tag<WithoutEdgeId_> >; TPropertyMap = String<IntervalTreeNode<IntervalAndCargo<int, int>, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:  1917 |         findIntervals(g, pm, act_knot, query_begin, query_end, result);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15:   required from ‘void seqan::findIntervals(const IntervalTree<TValue, TCargo>&, TValue, TValue, String<TChar>&) [with TValue = int; TCargo = int]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:  1898 |         findIntervals(tree.g,tree.pm,query_begin,query_end,result);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:582:17:   required from ‘int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&) [with TIndelSet = StringSet<IndelInfo>; TGenome = StringSet<String<SimpleType<unsigned char, Dna5_>, Alloc<> > >; TGenomeIDs = String<String<char, Alloc<> > >; TOptions = IndelCompareOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:   582 |                         findIntervals(itree,beginPoint,endPoint,intersectingIntervals);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |                         ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:834:31:   required from here
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:   834 |     int result = compareIndels(refIndels,predictedIndels,genomes,genomeIDs,options);
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note:       |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1949 |                 act_prop = property(pm,act_knot);
      |                 ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1961 |                                 next_prop = property(pm,targetVertex(it));
      |                                 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>& seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>&)’ is deprecated [-Wdeprecated-copy]
 1982 |                                         next_prop = property(pm,targetVertex(it));
      |                                         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because ‘seqan::IntervalTreeNode<seqan::IntervalAndCargo<int, int>, seqan::StorePointsOnly>’ has user-provided ‘seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>::IntervalTreeNode(const seqan::IntervalTreeNode<TInterval, seqan::StorePointsOnly>&) [with TInterval = seqan::IntervalAndCargo<int, int>]’
  398 |         IntervalTreeNode(IntervalTreeNode const & other):
      |         ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
                 from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of ‘void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType<unsigned char, Dna5_>]’:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1542 |     _arrayCopyForwardPointer(source_begin, source_end, target_begin, typename IsSimple<TValue>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from ‘void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1398 |     arrayCopyForward(source_begin, source_end, target_begin);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from ‘void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType<unsigned char, Dna5_>; TValueTarget = SimpleType<unsigned char, Dna5_>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1429 |     _arrayConstructCopyPointer(source_begin, source_end, target_begin, typename IsSimple<TValueTarget>::Type() );
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from ‘void seqan::_reserveStorage(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1840 |         arrayConstructCopy(old_array, old_array + seq_length, begin(seq, Standard()));
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from ‘typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(String<TValue, TSpec>&, TSize_, Tag<TUsage>) [with TValue = SimpleType<unsigned char, Dna5_>; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size<String<TValue, TSpec> >::Type = unsigned int]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:  1855 |     _reserveStorage(seq, new_capacity, tag);
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from ‘seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   131 |         reserve(*this, std::min(capacity(source), computeGenerousCapacity(source, length(source))), Exact());
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:444:39:   required from ‘int readGFF(const char*, TIndelSet&, TSnpSet&, TGenomeMap&, TOptions&) [with TIndelSet = seqan::StringSet<seqan::IndelInfo>; TSnpSet = seqan::StringSet<seqan::SnpInfo>; TGenomeMap = std::map<seqan::String<char, seqan::Alloc<> >, unsigned int>; TOptions = seqan::IndelCompareOptions<>]’
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   444 |                 TIndel indel = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |                                                     ^
/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:815:16:   required from here
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:   815 |     if (readGFF(toCString(options.inputReference), refIndels, refSnps, gIdStringToIdNumMap, options) > 0)
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note:       |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
 1521 |     ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
                 from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68:
/builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: ‘class seqan::SimpleType<unsigned char, seqan::Dna5_>’ declared here
  116 | class SimpleType
      |       ^~~~~~~~~~
[100%] Linking CXX executable ../../../bin/variant_comp
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/cmake -E cmake_link_script CMakeFiles/variant_comp.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O0  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/variant_comp.dir/variant_comp.cpp.o -o ../../../bin/variant_comp  -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target variant_comp
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.wjIhOT
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386
++ dirname /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386
+ CFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall  -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seqan-1.4.2
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386 'INSTALL=/usr/bin/install -p' -C build/Release
make: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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/usr/bin/make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/micro_razers/CMakeFiles/micro_razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  9%] Built target micro_razers
/usr/bin/make  -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/pair_align/CMakeFiles/pair_align.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Built target pair_align
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 13%] Built target rabema_prepare_sam
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Built target rabema_build_gold_standard
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 15%] Built target rabema_evaluate
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_do_search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 17%] Built target rabema_do_search
/usr/bin/make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/razers/CMakeFiles/razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Built target razers
/usr/bin/make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/razers2/CMakeFiles/razers2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 21%] Built target razers2
/usr/bin/make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 23%] Built target sak
/usr/bin/make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Built target sam2matrix
/usr/bin/make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/samcat/CMakeFiles/samcat.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 26%] Built target samcat
/usr/bin/make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Built target seqan_tcoffee
/usr/bin/make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/seqcons/CMakeFiles/seqcons.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target seqcons
/usr/bin/make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/snp_store/CMakeFiles/snp_store.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Built target snp_store
/usr/bin/make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/splazers/CMakeFiles/splazers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 31%] Built target splazers
/usr/bin/make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/stellar/CMakeFiles/stellar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Built target stellar
/usr/bin/make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/tree_recon/CMakeFiles/tree_recon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 34%] Built target tree_recon
/usr/bin/make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 34%] Built target seqan_extras
/usr/bin/make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/alf/CMakeFiles/alf.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Built target alf
/usr/bin/make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Built target breakpoint_calculator
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/bisar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target bisar
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/casbar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 39%] Built target casbar
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/four2three.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Built target four2three
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Built target fx_bam_coverage
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 43%] Built target fx_fastq_stats
/usr/bin/make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/gustaf/CMakeFiles/gustaf.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 44%] Built target gustaf
/usr/bin/make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/insegt/CMakeFiles/insegt.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 46%] Built target insegt
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_sim.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Built target mason_sim
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_genome.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 55%] Built target mason_genome
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_methylation.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 56%] Built target mason_methylation
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Built target mason_frag_sequencing
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_variator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Built target mason_variator
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_materializer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target mason_materializer
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_simulator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 62%] Built target mason_simulator
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_splicing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 63%] Built target mason_splicing
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_tests.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 65%] Built target mason_tests
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 66%] Built target roi_plot_thumbnails
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 68%] Built target bam2roi
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 71%] Built target roi_feature_projection
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Built target param_chooser
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 73%] Built target test_funcs_param_chooser
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Built target razers3
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Built target razers3_simulate_reads
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 78%] Built target razers3_quality2prob
/usr/bin/make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Built target rep_sep
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Built target search
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/join.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 81%] Built target join
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Built target test_sflex_demultiplex
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 84%] Built target test_sflex_trimming
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 86%] Built target test_sflex_adapter
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Built target test_sflex_general_processing
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 88%] Built target seqan_flexlib
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 89%] Built target sflexQC
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 90%] Built target sflexAR
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 91%] Built target sflexDMulti
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 93%] Built target sflexFilter
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Built target seqan_flexbar
/usr/bin/make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/sgip/CMakeFiles/sgip.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 97%] Built target sgip
/usr/bin/make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make  -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target variant_comp
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/dfi
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/dfi/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/dfi/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/dfi/example/fasta1.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/dfi/example/fasta2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/fiona
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/compute_gain
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/fiona/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/fiona/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/fiona/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/mason
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason/example/SRR018294.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason/example/SRR018311.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason/example/SRR026674.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason/example/SRR049254.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/micro_razers
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/micro_razers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/micro_razers/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/micro_razers/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/micro_razers/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/micro_razers/example/reads.fa.result
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/pair_align
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/pair_align/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/pair_align/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/rabema_prepare_sam
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/rabema_build_gold_standard
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/rabema_evaluate
-- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/rabema_prepare_sam
-- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/rabema_build_gold_standard
-- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/rabema_evaluate
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/rabema/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/rabema/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/razers
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers/example/reads2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/razers2
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers2/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers2/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers2/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers2/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers2/example/reads2.fa
Change Dir: '/builddir/build/BUILD/seqan-1.4.2/build/Release'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile sak_doc
gmake[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/gmake  -f CMakeFiles/Makefile2 sak_doc
gmake[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 3
/usr/bin/gmake  -f CMakeFiles/Makefile2 core/apps/sak/CMakeFiles/sak_doc.dir/all
gmake[3]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake "--color="
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake  -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
gmake[4]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'.
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  0%] Built target seqan_core
/usr/bin/gmake  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake "--color="
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake  -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
gmake[4]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'.
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 66%] Built target sak
/usr/bin/gmake  -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/depend
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake "--color="
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake  -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/build
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 66%] Generating README.sak.txt
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=txt > README.sak.txt
[100%] Generating sak.1
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=man > sak.1
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target sak_doc
gmake[3]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0
gmake[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
gmake[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'

-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/sak
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sak/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sak/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sak/README.sak.txt
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sak/man/sak.1
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/sam2matrix
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sam2matrix/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sam2matrix/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/samcat
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/samcat/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/samcat/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/seqan_tcoffee
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqan_tcoffee/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqan_tcoffee/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqan_tcoffee/example/seq.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/seqcons
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqcons/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqcons/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/snp_store
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/snp_store/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/snp_store/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/snp_store/example/exampleGenome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/snp_store/example/exampleReads.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/splazers
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/splazers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/splazers/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/splazers/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/splazers/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/splazers/example/reads.fa.result
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/stellar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/stellar/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/stellar/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/stellar/example/NC_001474.fasta
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/stellar/example/NC_001477.fasta
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/stellar/example/reads.fasta
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/tree_recon
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/tree_recon/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/tree_recon/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/tree_recon/example/example.dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/alf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/alf/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/alf/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/alf/example/small.fasta
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/breakpoint_calculator
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/breakpoint_calculator/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/breakpoint_calculator/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/breakpoint_calculator/example/alignment.maf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/bisar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/casbar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/four2three
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/bs_tools/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/bs_tools/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/fx_bam_coverage
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/fx_tools/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/fx_tools/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/gustaf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/gustaf/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/gustaf/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/gustaf/example/adeno.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/gustaf/example/adeno_modified.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/gustaf/example/adeno_modified_reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/gustaf/example/stellar.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/insegt
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/insegt/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/insegt/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/insegt/example/annoOutput.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/insegt/example/annotations.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/insegt/example/readOutput.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/insegt/example/tupleOutput.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/mason_genome
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/mason_frag_sequencing
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/mason_variator
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/mason_materializer
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/mason_simulator
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason2/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason2/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason2/example/adeno_virus.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/bam2roi
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/roi_feature_projection
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/roi_plot_thumbnails
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/bed_sort.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/gff_sort.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/roi_sort.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/roi_plot_9.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/plot.awk
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/ps2pswLinks.gawk
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/ngs_roi/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/ngs_roi/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/ngs_roi/example/dmel.bed
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/ngs_roi/example/dmel.gtf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/ngs_roi/example/example.bam
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/ngs_roi/R/ngsroi_0.1.tar.gz
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/ngs_roi/R/ngsroi_0.1.zip
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/param_chooser
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/param_chooser/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/param_chooser/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/razers3
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers3/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers3/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers3/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers3/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers3/example/reads2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/rep_sep
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/rep_sep/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/rep_sep/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/join
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/searchjoin/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/searchjoin/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/seqan_flexbar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqan_flexbar/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqan_flexbar/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/sgip
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/example/iso_m2D_m196.A01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/example/iso_r01_m200.A00
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/example/iso_r01_m200.A01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/example/iso_r01_m200.B00
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/example/iso_r01_m200.B01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/example/latin-4
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/example/lattice-4
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip/example/sts-7
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/variant_comp
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/variant_comp/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/variant_comp/README
make: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
+ mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/include/seqan
+ cp -pr extras/include/seqan/LICENSE extras/include/seqan/align_extend extras/include/seqan/align_extend.h extras/include/seqan/align_profile extras/include/seqan/align_profile.h extras/include/seqan/align_split extras/include/seqan/align_split.h extras/include/seqan/alignment_free extras/include/seqan/alignment_free.h extras/include/seqan/bam_io extras/include/seqan/basic extras/include/seqan/basic_extras.h extras/include/seqan/bed_io extras/include/seqan/bed_io.h extras/include/seqan/find extras/include/seqan/find_extras.h extras/include/seqan/find_motif extras/include/seqan/find_motif.h extras/include/seqan/index extras/include/seqan/index_extras.h extras/include/seqan/journaled_set extras/include/seqan/journaled_set.h extras/include/seqan/math extras/include/seqan/math.h extras/include/seqan/misc extras/include/seqan/misc_extras.h extras/include/seqan/parse_lm extras/include/seqan/parse_lm.h extras/include/seqan/roi_io extras/include/seqan/roi_io.h extras/include/seqan/sequence extras/include/seqan/sequence_extras.h extras/include/seqan/statistics extras/include/seqan/statistics.h extras/include/seqan/translation extras/include/seqan/translation.h extras/include/seqan/vcf_io extras/include/seqan/vcf_io.h /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/include/seqan
+ cp -pr core/include/seqan/LICENSE core/include/seqan/align core/include/seqan/align.h core/include/seqan/arg_parse core/include/seqan/arg_parse.h core/include/seqan/bam_io core/include/seqan/bam_io.h core/include/seqan/basic core/include/seqan/basic.h core/include/seqan/consensus core/include/seqan/consensus.h core/include/seqan/file core/include/seqan/file.h core/include/seqan/find core/include/seqan/find.h core/include/seqan/gff_io core/include/seqan/gff_io.h core/include/seqan/graph_algorithms core/include/seqan/graph_algorithms.h core/include/seqan/graph_align core/include/seqan/graph_align.h core/include/seqan/graph_msa core/include/seqan/graph_msa.h core/include/seqan/graph_types core/include/seqan/graph_types.h core/include/seqan/index core/include/seqan/index.h core/include/seqan/map core/include/seqan/map.h core/include/seqan/misc core/include/seqan/modifier core/include/seqan/modifier.h core/include/seqan/parallel core/include/seqan/parallel.h core/include/seqan/pipe core/include/seqan/pipe.h core/include/seqan/platform core/include/seqan/platform.h core/include/seqan/random core/include/seqan/random.h core/include/seqan/score core/include/seqan/score.h core/include/seqan/seeds core/include/seqan/seeds.h core/include/seqan/seq_io core/include/seqan/seq_io.h core/include/seqan/sequence core/include/seqan/sequence.h core/include/seqan/sequence_journaled core/include/seqan/sequence_journaled.h core/include/seqan/store core/include/seqan/store.h core/include/seqan/stream core/include/seqan/stream.h core/include/seqan/system core/include/seqan/system.h core/include/seqan/version.h /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/include/seqan
+ mkdir -p seqandoc
+ cp -pr /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/alf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/breakpoint_calculator /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/bs_tools /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/dfi /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/fiona /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/fx_tools /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/gustaf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/insegt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/mason2 /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/micro_razers /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/ngs_roi /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/pair_align /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/param_chooser /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/rabema /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers2 /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/razers3 /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/rep_sep /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sak /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sam2matrix /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/samcat /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/searchjoin /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqan_flexbar /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqan_tcoffee /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/seqcons /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/sgip /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/snp_store /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/splazers /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/stellar /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/tree_recon /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan/variant_comp seqandoc
+ rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan
+ rm -f 'seqandoc/*.txt'
+ mv /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/join /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin/searchjoin
+ find /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/bin -type f -name '*.h' -exec chmod 0755 '{}' ';'
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.4.2-53.fc40 --unique-debug-suffix -1.4.2-53.fc40.i386 --unique-debug-src-base seqan-1.4.2-53.fc40.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/seqan-1.4.2
find-debuginfo: starting
Extracting debug info from 43 files
DWARF-compressing 43 files
sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/seqan-1.4.2-53.fc40.i386
24419 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: seqan-1.4.2-53.fc40.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.H6wmmz
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/README.rst /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.RBtk2d
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(gnulib) seqan = 1.4.2-53.fc40 seqan(x86-32) = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux.so.2 ld-linux.so.2(GLIBC_2.3) libbz2.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.25) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.2) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.35) libc.so.6(GLIBC_2.36) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libemon.so.1.3.1 libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(GOMP_4.5) libgomp.so.1(OMP_1.0) libgomp.so.1(OMP_2.0) libgomp.so.1(OMP_3.0) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.23) libm.so.6(GLIBC_2.29) libz.so.1 libz.so.1(ZLIB_1.2.2.3) libz.so.1(ZLIB_1.2.3.3) rtld(GNU_HASH)
Processing files: seqan-devel-1.4.2-53.fc40.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.yMMj0M
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan-devel
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/README.rst /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan-devel
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.DUW3NY
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-devel
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-devel
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-devel
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: seqan-devel = 1.4.2-53.fc40 seqan-devel(x86-32) = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-doc-1.4.2-53.fc40.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.414BG5
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan-doc
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/seqandoc /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/doc/seqan-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.6tHugJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-doc
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-doc
+ cp -pr /builddir/build/BUILD/seqan-1.4.2/LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386/usr/share/licenses/seqan-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: seqan-doc = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-debugsource-1.4.2-53.fc40.i686
Provides: seqan-debugsource = 1.4.2-53.fc40 seqan-debugsource(x86-32) = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-debuginfo-1.4.2-53.fc40.i686
Provides: debuginfo(build-id) = 013e627e7a0cc4163bb63998a82a8aba05e0dcf5 debuginfo(build-id) = 028ca46be25e11dfa5c8ad95537ee39bf143570e debuginfo(build-id) = 072b5193ffdcff5dc32260c46c6d995e45655f1e debuginfo(build-id) = 08cf6c06a88827c573ee98ca4676c37f06795cf7 debuginfo(build-id) = 0ec6a5ea3265186539aba0475a438e14ee58d59f debuginfo(build-id) = 15d73bfe046ec61855f599e7f379496fedc84e2d debuginfo(build-id) = 16a15257460a549a4120fce256d62e39dfb74916 debuginfo(build-id) = 19c5ba9f4e3e26ecc3d228224ab8fde23fdc7cfa debuginfo(build-id) = 1a0b3819ff969d0aaee7ac57449a3dfba9327cd4 debuginfo(build-id) = 1b1f5dc33256bae6dc41dfb53dd8cea2d5b2f5e0 debuginfo(build-id) = 1c008d4b372ce87626f6fdde2b3f871a2103e96f debuginfo(build-id) = 295a73618b626014a01b0a0b60d4a464b394e89b debuginfo(build-id) = 2ae68439e932782530ea255cf4ff76ffd5fb1a62 debuginfo(build-id) = 2cb5ea124f42ba000a6e3e4dd0cc55e57707b25b debuginfo(build-id) = 3002959bf556f17f80a6829e506de2927c4cd398 debuginfo(build-id) = 333fa2be4b429371f1f4798f60af0f677b08541b debuginfo(build-id) = 52943ffead3a9cdca1137a44cd123b65189e2e39 debuginfo(build-id) = 5576ee1404e204a113c2515e8d8a9e4c5a12c6e6 debuginfo(build-id) = 5ffa89e9b4c7d99bbb98410a334bdbe5339f1926 debuginfo(build-id) = 6262dcb103019100f1e02eedb58572ae41c572e4 debuginfo(build-id) = 68f3c33360e140693adeb9e8ba16c48d6740f322 debuginfo(build-id) = 6e914817f8dd2501744b451e13334ff5ecf3bd14 debuginfo(build-id) = 71bc5ae0feea49547e27329fc639af43edb5a9b6 debuginfo(build-id) = 7636811847e9f92db14e7841dafd1bcc1127ea2b debuginfo(build-id) = 785a404f9dcd3018d118625b0af6507ad3cb5194 debuginfo(build-id) = 7d359bb2165c9090cdb768c8ff7d386da0d80e21 debuginfo(build-id) = 88e722f1d5560a60f8ca252e0fb11c38c0dbe2d4 debuginfo(build-id) = 9b9fdb081f2e5826fe06ef10fb712263475cfc61 debuginfo(build-id) = aeb5173719690641de236a001af0f3133f373bf3 debuginfo(build-id) = b09e78714c0aa2565b6c4c0e8449ad2b07b45e8e debuginfo(build-id) = bcc2511e69014ea969e8faed6fb9e1e0d825a39d debuginfo(build-id) = c27ab958b3e8f84d2b3f2b87073b5dd3e025828d debuginfo(build-id) = c6e45e6a45c5459db96c770387668743837229e0 debuginfo(build-id) = c90f4ed1a74e3eb8b15fdad83fad211fa12965f5 debuginfo(build-id) = da69b33e27fcd67180a69582a522ff6fcd295916 debuginfo(build-id) = e7e4be81d9a2ca26f85255e90dc8444147cf3c94 debuginfo(build-id) = e8b6ec2e458300a9db6e76d1cd9b5fd4eeb3caab debuginfo(build-id) = ea361bbe41c6c44d71840c04922e978f77d4ebfe debuginfo(build-id) = ed463e0d608bc5b1b9f607460aca16b26b508638 debuginfo(build-id) = edfa6f9668c53f00a91cd29a2e046a90a0734211 debuginfo(build-id) = f066eac2559cdb4d0bec19ed61fb48ade4187080 debuginfo(build-id) = f7080374e30748596f2ff0d9aefd1b8df868384d debuginfo(build-id) = f78cd5785f02c699239de8d92cdbf1d2311c9992 seqan-debuginfo = 1.4.2-53.fc40 seqan-debuginfo(x86-32) = 1.4.2-53.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: seqan-debugsource(x86-32) = 1.4.2-53.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386
Wrote: /builddir/build/RPMS/seqan-devel-1.4.2-53.fc40.i686.rpm
Wrote: /builddir/build/RPMS/seqan-debugsource-1.4.2-53.fc40.i686.rpm
Wrote: /builddir/build/RPMS/seqan-doc-1.4.2-53.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/seqan-1.4.2-53.fc40.i686.rpm
Wrote: /builddir/build/RPMS/seqan-debuginfo-1.4.2-53.fc40.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.PRrcu3
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-53.fc40.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.oPqbSq
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/seqan-1.4.2-SPECPARTS
+ rm -rf seqan-1.4.2 seqan-1.4.2.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    %patchN is deprecated (2 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild seqan-1.4.2-53.fc40.src.rpm
Finish: build phase for seqan-1.4.2-53.fc40.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1706326045.169591/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/seqan-1.4.2-53.fc40.src.rpm) Config(child) 12 minutes 10 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "seqan-devel",
            "epoch": null,
            "version": "1.4.2",
            "release": "53.fc40",
            "arch": "i686"
        },
        {
            "name": "seqan-doc",
            "epoch": null,
            "version": "1.4.2",
            "release": "53.fc40",
            "arch": "noarch"
        },
        {
            "name": "seqan",
            "epoch": null,
            "version": "1.4.2",
            "release": "53.fc40",
            "arch": "src"
        },
        {
            "name": "seqan-debugsource",
            "epoch": null,
            "version": "1.4.2",
            "release": "53.fc40",
            "arch": "i686"
        },
        {
            "name": "seqan-debuginfo",
            "epoch": null,
            "version": "1.4.2",
            "release": "53.fc40",
            "arch": "i686"
        },
        {
            "name": "seqan",
            "epoch": null,
            "version": "1.4.2",
            "release": "53.fc40",
            "arch": "i686"
        }
    ]
}
RPMResults finished